PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os03g18950.1 | ||||||||
Common Name | Os03g0301500, OsJ_010105 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | C3H | ||||||||
Protein Properties | Length: 458aa MW: 48549.2 Da PI: 6.1284 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 40.8 | 3.6e-13 | 384 | 407 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ktelC+ + r G C+yG+rC+FaHg LOC_Os03g18950.1 384 KTELCNKWER-GACPYGARCRFAHG 407 8*********.*************9 PP | |||||||
2 | zf-CCCH | 18.4 | 3.8e-06 | 420 | 446 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ykt +C+ fa+ C+yG rC+F H+p LOC_Os03g18950.1 420 YKTLPCQMFAAASGCPYGHRCHFRHSP 446 9***********************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 3.9E-16 | 378 | 414 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.8E-8 | 382 | 408 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.35E-8 | 382 | 413 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.079 | 382 | 409 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.4E-10 | 384 | 407 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.5E-10 | 415 | 446 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.45E-7 | 416 | 445 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.5E-4 | 419 | 446 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.746 | 419 | 447 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0061158 | Biological Process | 3'-UTR-mediated mRNA destabilization | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003730 | Molecular Function | mRNA 3'-UTR binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 458 aa Download sequence Send to blast |
MKLGISGGAG EAMEGELSFV SPARSSCFSF EGGGSGSPTW VSTVEALLRS PTSSVSDGGG 60 GGGGGYNSPA RASSPLQKQI PYCRDAGDFS SLTWASTLEK PLESPSSCIS DGRGGGFGSP 120 TSAFPPEKLL ISPPTCVSDN RGVGNVGGFP SLPWASSLER LLTSPSSCVS DSRGVGNADG 180 FPSLPWASSL EKPLTSPSSC VSDGRSGGYS SPLGASAERE REVREAEMLL RAIAERYDDC 240 FLRLRDAAAE LSDLHRERLR LAAENLHLSL LLEELESEQR KQASAMAPPK LEEDEAAQGG 300 APKSISIRSP GYLSQKPPQG QARPQRLRVR ASQAMEISHP NCLIFVMGNQ CSPKEAAAAG 360 DEEDEEDKGG GEVEVEAYRQ GAAKTELCNK WERGACPYGA RCRFAHGLQE LRPVIRHPRY 420 KTLPCQMFAA ASGCPYGHRC HFRHSPLRAA AAESFCY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1m9o_A | 1e-17 | 384 | 446 | 11 | 74 | Tristetraproline |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | Q10MN8 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os03g18950.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os03g18950 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC118668 | 0.0 | AC118668.2 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0036G02, from chromosome 3, complete sequence. | |||
GenBank | AC137267 | 0.0 | AC137267.2 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0032G21, from chromosome 3, complete sequence. | |||
GenBank | AP014959 | 0.0 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025880078.1 | 0.0 | putative zinc finger CCCH domain-containing protein 21 | ||||
Swissprot | Q10MN8 | 0.0 | C3H21_ORYSJ; Putative zinc finger CCCH domain-containing protein 21 | ||||
TrEMBL | A0A0E0GEB6 | 0.0 | A0A0E0GEB6_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA02G38660.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12143 | 32 | 35 | Representative plant | OGRP2058 | 16 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68200.2 | 2e-32 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os03g18950.1 |
Publications ? help Back to Top | |||
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