PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os03g17150.1 | ||||||||
Common Name | LOC4332436, Os03g0279700, OSNPB_030279700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | C2H2 | ||||||||
Protein Properties | Length: 192aa MW: 19708.4 Da PI: 7.0992 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 10.7 | 0.0017 | 51 | 73 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ F++ L H +H LOC_Os03g17150.1 51 FECKTCNRQFPSFQALGGHRASH 73 89**********99999998887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.67E-8 | 49 | 116 | No hit | No description |
PROSITE profile | PS50157 | 9.827 | 51 | 78 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.16 | 51 | 73 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 1.2E-12 | 51 | 75 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 53 | 73 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 4.2E-9 | 93 | 118 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 2.5 | 94 | 116 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 96 | 116 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009005 | anatomy | root |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
MAYGKRPRQQ AEEAAFSLFD SSDMARIMLL FSGAHGGGGG AAAASPPERM FECKTCNRQF 60 PSFQALGGHR ASHKKPRLAD GDPAAEAPAK PKVHGCSICG LEFAVGQALG GHMRRHRAVM 120 ADGLGLGLSL GLGIGVVGQS DDDGGKKKAA AAAAAAELVF DLNAPAIEEE PDRARPAGLA 180 VEFPVVVDFP C* |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | Q10N75 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os03g17150.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os03g17150 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC137069 | 0.0 | AC137069.2 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0009C19, from chromosome 3, complete sequence. | |||
GenBank | AK111338 | 0.0 | AK111338.1 Oryza sativa Japonica Group cDNA clone:002-181-F05, full insert sequence. | |||
GenBank | AP014959 | 0.0 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012611 | 0.0 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015630125.1 | 1e-134 | zinc finger protein ZAT7 | ||||
TrEMBL | A0A0E0FLU7 | 1e-133 | A0A0E0FLU7_ORYNI; Uncharacterized protein | ||||
TrEMBL | A2XF72 | 1e-133 | A2XF72_ORYSI; Uncharacterized protein | ||||
TrEMBL | Q10N75 | 1e-133 | Q10N75_ORYSJ; Os03g0279700 protein | ||||
STRING | OS03T0279700-01 | 1e-133 | (Oryza sativa) | ||||
STRING | ONIVA01G18540.1 | 1e-133 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP501 | 37 | 157 | Representative plant | OGRP131 | 15 | 149 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G53600.1 | 1e-26 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os03g17150.1 |
Entrez Gene | 4332436 |