PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g17130.1
Common NameOs03g0279500
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 390aa    MW: 42671.5 Da    PI: 9.9268
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g17130.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.37.5e-05271314654
                       HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       ++  ++R +++ +++  L++l+ +      +K + a++L +A  +I++L
  LOC_Os03g17130.1 271 KATCKKRSQKLGDRITALQQLVSPY-----GKTDTASVLHEAAACIRQL 314
                       56669******************99.....9*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.702265314IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.3E-6271323IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-9275325IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009089anatomyendosperm
PO:0007042developmental stagewhole plant fruit formation stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MVIASNKHEL MKYLSLTLER FRLQKQQLCR WIRHDDLDML TDELERKRYR TLILMADTFL  60
ANDLRQFPSA KRKASLYTST LANIFILMLK GSTGIQLLSL FSGYMKDDVS SAVETQLAES  120
CRLESGVETC RLLVSSVAVK CEASNSPSTT VGFDRMIAAD YDLFHHMSFS PSLQNLQSPT  180
FFTTRSSESY LGESSIYGGG ARPALAQFSY SQPIAATSAA HLVRWTAAGE PMTGDGGFRS  240
SKRLKTATTA TTQPPRHGVK CHAKPRNQTT KATCKKRSQK LGDRITALQQ LVSPYGKTDT  300
ASVLHEAAAC IRQLHQQIQI LTAPYPGTSS SSASSQQQDA GGGGGTATEL RRRGLCVAAL  360
SPAVVSLAAE GGRRRTDVED QKRIWFSNQ*
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ10N77
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g17130.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g17130
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0839424e-83AC083942.8 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0002D01, from chromosome 3, complete sequence.
GenBankAC1370694e-83AC137069.2 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0009C19, from chromosome 3, complete sequence.
GenBankAP0149594e-83AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126114e-83CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630126.10.0transcription factor bHLH110 isoform X1
RefseqXP_015630127.10.0transcription factor bHLH110 isoform X1
TrEMBLQ10N770.0Q10N77_ORYSJ; Helix-loop-helix DNA-binding domain containing protein
STRINGORUFI03G13300.10.0(Oryza rufipogon)
STRINGONIVA01G18550.20.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37582426
Representative plantOGRP1412633
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19500.12e-17bHLH family protein