PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os03g15660.1 | ||||||||
Common Name | LOC4332331, OJ1041F02.11, Os03g0263000, OsJ_10227, OSNPB_030263000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | ERF | ||||||||
Protein Properties | Length: 259aa MW: 26070 Da PI: 5.3077 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.4 | 7.2e-18 | 49 | 98 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 ykGVr ++ +g+Wv+eIr p + +r++lg++ t+e Aa+a++aa ++l+g LOC_Os03g15660.1 49 PYKGVRMRS-WGSWVSEIRAP-----HqkRRIWLGSYATPEAAARAYDAALLCLKG 98 59****998.**********7.....335************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51257 | 5 | 1 | 28 | No hit | No description |
SMART | SM00380 | 6.6E-34 | 49 | 112 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.0E-29 | 49 | 108 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.918 | 49 | 106 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.11E-19 | 50 | 108 | No hit | No description |
Pfam | PF00847 | 5.4E-11 | 50 | 98 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.0E-8 | 50 | 61 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.63E-19 | 50 | 107 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 6.0E-8 | 72 | 88 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0034605 | Biological Process | cellular response to heat | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0071497 | Biological Process | cellular response to freezing | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009089 | anatomy | endosperm | ||||
PO:0007042 | developmental stage | whole plant fruit formation stage | ||||
PO:0007633 | developmental stage | endosperm development stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MVKNTSNKCI AAAGATAAAG LGGGAASCSG GGGDGKVTTA AAAALAVRPY KGVRMRSWGS 60 WVSEIRAPHQ KRRIWLGSYA TPEAAARAYD AALLCLKGSD AVLNFPSSAS SRRRLDIHRG 120 GTDSAAGDMS PRSIQRVAAA AAAAFDAAAA AVVVDESCSC SAEAMSSTPT SGATSLSTLG 180 SSGGGDVLDH ATTPSSSSSA AANVCSPPLE GDHELWTELD AFASPKFMDL MAAGGTAFSS 240 PWEEPEEDGE LMRLWSFC* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.35111 | 0.0 | flower| root |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32978958 | 0.0 | ||||
Expression Atlas | Q84Q94 | - |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00156 | DAP | Transfer from AT1G21910 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os03g15660.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os03g15660 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC135206 | 0.0 | AC135206.3 Oryza sativa Japonica Group chromosome 3 clone OJ1041F02, complete sequence. | |||
GenBank | AP014959 | 0.0 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015630150.1 | 0.0 | ethylene-responsive transcription factor ERF013 | ||||
TrEMBL | Q84Q94 | 0.0 | Q84Q94_ORYSJ; AP2 domain containing protein, expressed | ||||
STRING | OS03T0263000-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10830 | 30 | 40 | Representative plant | OGRP12777 | 4 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21910.1 | 1e-24 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os03g15660.1 |
Entrez Gene | 4332331 |