PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g15440.1
Common NameLOC4332318, Os03g0260600, OsJ_10212, OSNPB_030260600
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 410aa    MW: 43113.3 Da    PI: 5.6172
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g15440.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.21.5e-13201247354
                       HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       ++h+e+ErrRR+riN  +++Lr+llP+      +K +Ka+ L ++++++k+L
  LOC_Os03g15440.1 201 KSHSEAERRRRERINAHLARLRSLLPNT-----TKTDKASLLAEVIQHVKEL 247
                       79*************************9.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.022198247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.7E-11201247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-15202268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-15202269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-13204253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.17E-5211250No hitNo description
CDDcd048734.63E-6285331No hitNo description
Gene3DG3DSA:3.30.70.2609.0E-5285335No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009038anatomypalea
PO:0001048developmental stagepalea development stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MGAHGDHRHH HHHQEAGVLV DEEEEEVIEQ ACGGPTSGVV EQEVGGDGGG VCQDAAGMVF  60
EATSSVGSVS ATMGPPPIMC WPPPAQPVHG AIHHHHNLGG GGGQQSPFFP LLPPLPPQPP  120
PPPPFFADFY ARRALQYAYD HSGGASSSSD PLGLGGLYMG HHGSHVAGMM MPPPFAPSPF  180
GDLGRMTAQE IMDAKALAAS KSHSEAERRR RERINAHLAR LRSLLPNTTK TDKASLLAEV  240
IQHVKELKRQ TSEITEEACP LPTESDELTV DASSDEDGRL VVRASLCCDD RTDLLPDLIR  300
ALKALRLRAL KAEITTLGGR VKNVLVVTGD DSAAAAACAG TDGDGEQQEE AMQAPMSPQH  360
TVASIQDALR AVMERTASAT EESGGSGAGG GLKRQRTTSL SAILENRSI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1206211ERRRRE
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.547430.0callus| panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329918580.0
Expression AtlasQ10NS6-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g15440.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g15440
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1066490.0AK106649.1 Oryza sativa Japonica Group cDNA clone:002-113-F07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006649780.10.0PREDICTED: transcription factor bHLH30-like
SwissprotQ9S7Y16e-75BH030_ARATH; Transcription factor bHLH30
TrEMBLA0A0D9Z4Z00.0A0A0D9Z4Z0_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0GK400.0A0A0E0GK40_ORYNI; Uncharacterized protein
TrEMBLI1P9P50.0I1P9P5_ORYGL; Uncharacterized protein
TrEMBLQ10NS60.0Q10NS6_ORYSJ; Helix-loop-helix DNA-binding domain containing protein, expressed
STRINGOGLUM03G11280.10.0(Oryza glumipatula)
STRINGOS03T0260600-010.0(Oryza sativa)
STRINGONIVA03G12280.10.0(Oryza nivara)
STRINGORGLA03G0109100.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19183898
Representative plantOGRP37715106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.13e-54bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ohashi-Ito K, et al.
    A bHLH complex activates vascular cell division via cytokinin action in root apical meristem.
    Curr. Biol., 2014. 24(17): p. 2053-8
    [PMID:25131670]
  3. Katayama H, et al.
    A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem.
    Curr. Biol., 2015. 25(23): p. 3144-50
    [PMID:26616019]