PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g15040.2
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 521aa    MW: 59055 Da    PI: 8.1501
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g15040.2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR184.31.9e-2670160188
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                       +fY++YA+++GF++r+s+ ++s+r+++i++r+ vCskeg++e+++ +    +++++ r+ tr+gCka+l++kk   +kw+vtk+ + HnH 
  LOC_Os03g15040.2  70 DFYSKYARHAGFRIRISRYTRSRRDNSIISRRIVCSKEGFHETRDCEnlhVDQKQQARVGTRVGCKAMLMIKKFGPDKWVVTKFIKIHNHG 160
                       6*******************************************999998899999**********************************5 PP
2FAR187.32.3e-27207300290
              FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.....tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                       fY +YA+  GF+ r+s+  +s+r+++i++r+ vCskeg+re + +k      ++++r+r+ tr+gCka+++vk++++gkw+v+k+e+eHnH+l
  LOC_Os03g15040.2 207 FYINYARVNGFRARISRYCRSRRDNSIISRQIVCSKEGFREVRARKditdgGKTTKRPRMITRVGCKAMIVVKRMNSGKWMVSKFEKEHNHSL 299
                       9******************************************9999999999999***********************************99 PP

              FAR1  90 a 90 
                        
  LOC_Os03g15040.2 300 L 300
                       6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031019.4E-2470160IPR004330FAR1 DNA binding domain
PfamPF031017.1E-25207300IPR004330FAR1 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009585Biological Processred, far-red light phototransduction
GO:0010018Biological Processfar-red light signaling pathway
GO:0042753Biological Processpositive regulation of circadian rhythm
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 521 aa     Download sequence    Send to blast
MEGVVTSSVG EPNQDNEPRD SSIELPRVIT DMETSAMHDP EAQKLIGHEA DTELTPYEGM  60
EFESEDAARD FYSKYARHAG FRIRISRYTR SRRDNSIISR RIVCSKEGFH ETRDCENLHV  120
DQKQQARVGT RVGCKAMLMI KKFGPDKWVV TKFIKIHNHG PVPPRKPHAG EHHDCDLMEN  180
PHSIEVDPID EPVEGMEFES EEAAKLFYIN YARVNGFRAR ISRYCRSRRD NSIISRQIVC  240
SKEGFREVRA RKDITDGGKT TKRPRMITRV GCKAMIVVKR MNSGKWMVSK FEKEHNHSLL  300
SSRAVPITSN DSSREVIDFA ATSNDPNEVK AEGCSTGIQC NSTDSLTVLY NHLCQEAIKF  360
AKEGSVTEEI YHVAMNALKE AAEKVSEVKR SHPTMSQSKH EVMQMETMSA SQCSNDDKQK  420
TMTPQLKFLQ EPSPSLVLIP TNLLTHSSSN CADNIPLSCD LTINAGEVKH VSESSCLAAN  480
RKEDSSQKSQ PYRERMKGFM YFLKKLRLLF LRYLSRCTCL *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.267690.0callus| leaf| panicle| root| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329766590.0
Expression AtlasQ10NX3-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g15040.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g15040
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0666410.0AK066641.1 Oryza sativa Japonica Group cDNA clone:J013072M14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630687.10.0uncharacterized protein LOC4332292
TrEMBLQ10NX30.0Q10NX3_ORYSJ; FAR1 family protein, expressed
STRINGOS03T0255400-010.0(Oryza sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07500.13e-31FAR1 family protein