PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g15010.1
Common NameLOC4332288
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 1009aa    MW: 114537 Da    PI: 6.2124
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g15010.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR160.35.8e-19125231290
              FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...................tekerrtraetrtgCkaklkvkkek.dg 74 
                        Y++YA+++GF+ ++++ ++   +g  +++tf+C+  gk++ + +                    +ek+ r+ a ++tgCka+l ++ ++ d+
  LOC_Os03g15010.1 125 LYKTYAYRTGFHAVRRTCHNY--EGLRYRSTFTCTHGGKARADASPsdgsgaryplrsskraanaQEKRARRGAAEKTGCKAMLIIRDRRaDD 215
                       7***********999998887..7888*************99988899***************98888888999***************99** PP

              FAR1  75 kwevtkleleHnHela 90 
                       kw+v+ +eleHnH+++
  LOC_Os03g15010.1 216 KWKVEFVELEHNHPCT 231
                       *************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031019.4E-17125231IPR004330FAR1 DNA binding domain
PfamPF105511.4E-22358452IPR018289MULE transposase domain
PROSITE profilePS509669.409640676IPR007527Zinc finger, SWIM-type
SMARTSM005750.0029651678IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1009 aa     Download sequence    Send to blast
MGEGSERPRS SRAARARNPS FEVEVVVEEE EEDEEEAAVA AARRVKREVA DDLNGEPAEE  60
EDDDEEEVVV EEDEEVVVAS DEEGGDGEAD GGGEVAVAFE PRTLEEALVP RVGAVFDSVD  120
EAFSLYKTYA YRTGFHAVRR TCHNYEGLRY RSTFTCTHGG KARADASPSD GSGARYPLRS  180
SKRAANAQEK RARRGAAEKT GCKAMLIIRD RRADDKWKVE FVELEHNHPC TPDMVRFLKA  240
YREMPDSAKK KAKISDEMDD RVEKSLSEIA ETRKFPTRPK RSVGGGASVG GFRFSRSDSF  300
VQRFGDDDLI ALKKFIEAMQ RKKPNFIHYW DLDQETHVKN FFWTDSRSQA QYRYFGDVIT  360
LDVMYLQHSR ASLPLATILG VNNHGHLVLL GCGLLCSDKK ENYVWLLKRW LGCMNGKPPE  420
AITTTYSDAV AEAVAEVLPN ARHRFCFWHI LKKLQENVGR TNEKEAISLR FKEVVYDTVT  480
LTDFEREWGP MVEQYKLKDN DWFSALYSCR KQWAPGYVNH SFWAGTSAIR KVEKPDPYFD  540
GVVTTKTTLP VFLEQYETTL RGKLEREAYD DLRSYYSRLT SLSGLPFEEQ LMELYTVPMF  600
QAFQDEIKQL IHVICKEVDR SGNSITYMAS ELIQGKKVNY TVVYNSADKD VWCICRSFPS  660
RGILCSHALS VLKQENVLML PSKYILNRWR KDFRVLHATA SSSSISSDRD LSIFNDLYVR  720
GHEYLEDVID IGAREPELKE FVLTVMKEAK DKLVRPDHIH QADQRVDVNM SVTGQVSADR  780
GVDVNISSNS TSLIQGDRRV DTNVTSNTTA MVHGHGDSMT SNTTAMIRGD RRVEMKIPTP  840
HLIHGDGRID MNMASPLLMQ RDRRVDMNMA SPHMIQGDRR VDMNLASPHF IQSDRRVDMN  900
LASSHLIQGD RRVDMNMTSP HLIQGDTRVD MNMVSTAQNG MHSFDLVNVN LESGPLPMAA  960
TDFMQMHQHP PVYHPKQLLN MRDQVMDTNK RPNMETNTYF MGGGMHVG*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.95320.0callus| leaf| panicle| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329868340.0
Expression AtlasQ10NX9-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g15010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g15010
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1342340.0AC134234.3 Oryza sativa Japonica Group chromosome 3 clone OSJNBa0019J12, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632258.10.0protein FAR1-RELATED SEQUENCE 6
TrEMBLQ10NX90.0Q10NX9_ORYSJ; Transposon protein, putative, unclassified, expressed
STRINGOS03T0255000-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP1593133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-79FAR1-related sequence 5