PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os03g14850.1 | ||||||||
Common Name | Os03g0253400, OsJ_36636 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 186aa MW: 20579.8 Da PI: 10.0461 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 42.5 | 8.1e-14 | 20 | 57 | 6 | 43 |
HHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 6 ksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 k r fskR ++i+ KA+EL +LC++ vav+ +s++ LOC_Os03g14850.1 20 KKVRDACFSKRHTTIFNKANELAILCGVMVAVVFVSPN 57 6678999*****************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.0E-10 | 8 | 68 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 12.489 | 8 | 57 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 1.59E-17 | 9 | 69 | No hit | No description |
SuperFamily | SSF55455 | 8.76E-15 | 9 | 86 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.0E-15 | 19 | 65 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0020048 | anatomy | microspore | ||||
PO:0001009 | developmental stage | D pollen mother cell meiosis stage | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence Send to blast |
MVKCRARTTR KKIEIKRGDK KVRDACFSKR HTTIFNKANE LAILCGVMVA VVFVSPNANG 60 GIFSFGYPSV SSVANRFLAN APNNTSVSSS TQSGRDVEIR ELEREERELK EHLQASTDQN 120 KLLREAIAAR DGGQLMLLLQ SDCSELGPKG LVAVVRLWFR NSLVGIGLDR LCWLLQQILF 180 GLDWG* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.81835 | 2e-99 | panicle| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | Q10NZ5 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os03g14850.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os03g14850 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC134240 | 0.0 | AC134240.2 Oryza sativa Japonica Group chromosome 3 clone OSJNBb0081I10, complete sequence. | |||
GenBank | AP014959 | 0.0 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006651224.1 | 8e-66 | PREDICTED: agamous-like MADS-box protein AGL29 | ||||
TrEMBL | Q10NZ5 | 1e-133 | Q10NZ5_ORYSJ; Os03g0253400 protein | ||||
STRING | ORUFI03G11130.1 | 1e-131 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP20420 | 8 | 8 | Representative plant | OGRP16 | 17 | 761 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 4e-13 | AGAMOUS-like 62 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os03g14850.1 |