PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g14669.2
Common NameOsJ_10159
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NF-YC
Protein Properties Length: 247aa    MW: 25896.1 Da    PI: 5.0564
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g14669.2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC169.63.7e-53451501101
             NF-YC   1 qlksfwekq.....iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdi 88 
                       ql++fw++q     + +a+dfknh+lPlarikki+kadedv+misaeaPvl++kacelfilelt+rswlhaeenkrrtl+++d+aaa++rtd+
  LOC_Os03g14669.2  45 QLQAFWAYQrqeaeRASASDFKNHQLPLARIKKIMKADEDVRMISAEAPVLFAKACELFILELTIRSWLHAEENKRRTLQRNDVAAAIARTDV 137
                       89*****997665555689************************************************************************** PP

             NF-YC  89 fdflvdivprdel 101
                       fdflvdivpr+e 
  LOC_Os03g14669.2 138 FDFLVDIVPREEA 150
                       **********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.24E-3133141IPR009072Histone-fold
Gene3DG3DSA:1.10.20.104.7E-3761132IPR009072Histone-fold
PfamPF008082.8E-2069132IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0010468Biological Processregulation of gene expression
GO:0048586Biological Processregulation of long-day photoperiodism, flowering
GO:0051247Biological Processpositive regulation of protein metabolic process
GO:2000905Biological Processnegative regulation of starch metabolic process
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MDNQQLPYAG QPAAAGAGAP VPGVPGAGGP PAVPHHHLLQ QQQAQLQAFW AYQRQEAERA  60
SASDFKNHQL PLARIKKIMK ADEDVRMISA EAPVLFAKAC ELFILELTIR SWLHAEENKR  120
RTLQRNDVAA AIARTDVFDF LVDIVPREEA KEEPGSALGF AAGGPAGAVG AAGPAAGLPY  180
YYPPMGQPAP MMPAWHVPAW DPAWQQGAAP DVDQGAAGSF SEEGQQGFAG HGGAAASFPP  240
APPSSE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B1e-5153147395NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1119125RRTLQRN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.120370.0leaf| panicle| seed| stem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasB9F6T5
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of flowering time under long day (LD) conditions. Functions as repressor of flowering, independently of HD1 and GHD7. Controls flowering time by negatively regulating the expression of EHD1 and HD3A (PubMed:26542958). Component of the NF-Y/HAP transcription factor complex (By similarity). {ECO:0000250, ECO:0000269|PubMed:26542958}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g14669.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation under long day (LD) conditions. Expression increases at the end of the dark period, peaks in the beginning of the light period and gradually decreases during daytime. {ECO:0000269|PubMed:26542958}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g14669
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2880430.0AB288043.1 Oryza sativa Japonica Group OsHAP5C gene for HAP5 subunit of HAP complex, complete cds.
GenBankAC1342350.0AC134235.2 Oryza sativa Japonica Group chromosome 3 clone OSJNBa0030J04, complete sequence.
GenBankAC1342400.0AC134240.2 Oryza sativa Japonica Group chromosome 3 clone OSJNBb0081I10, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628319.11e-176nuclear transcription factor Y subunit C-2
RefseqXP_015628320.11e-176nuclear transcription factor Y subunit C-2
SwissprotA6BLW41e-177NFYC2_ORYSJ; Nuclear transcription factor Y subunit C-2
TrEMBLB9F6T51e-176B9F6T5_ORYSJ; Uncharacterized protein
STRINGOS03T0251350-001e-175(Oryza sativa)
STRINGONIVA03G11340.11e-175(Oryza nivara)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63470.23e-63nuclear factor Y, subunit C4
Publications ? help Back to Top
  1. Kim SK, et al.
    OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice.
    Planta, 2016. 243(3): p. 563-76
    [PMID:26542958]