PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os03g13790.1 | ||||||||
Common Name | LOC4332208, Os03g0241100, OsJ_10091, OSNPB_030241100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | MYB_related | ||||||||
Protein Properties | Length: 720aa MW: 78737.2 Da PI: 6.6052 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26.7 | 1.3e-08 | 14 | 56 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT +E++ + +a +q G++ +++I +++ ++ q++++++ + LOC_Os03g13790.1 14 AWTRQEEQNFFNALRQVGKN-FEKITLRVQ-SKSKDQVRHYYYRL 56 6*****************99.*********.***********976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.62E-9 | 10 | 60 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 13.155 | 10 | 61 | IPR017884 | SANT domain |
SMART | SM00717 | 5.2E-7 | 11 | 59 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.5E-7 | 14 | 56 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.6E-5 | 14 | 63 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.06E-6 | 14 | 57 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003682 | Molecular Function | chromatin binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009049 | anatomy | inflorescence | ||||
PO:0001083 | developmental stage | inflorescence development stage | ||||
PO:0007006 | developmental stage | IL.00 inflorescence just visible stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 720 aa Download sequence Send to blast |
MSLVRSAPAR QWAAWTRQEE QNFFNALRQV GKNFEKITLR VQSKSKDQVR HYYYRLVRRM 60 KKLLGPEFSL DAKNSKDTIA AMLCWWSLLE KFSCSASKLH LKPRRFKTFV EALGNQLLKD 120 RNKTRKKCPR GDVCLSSSSS AVNRTPGNES FSVKLLAVDV SNGSKVGSSK GSFFKKVTEP 180 NCSNKSGATK GDLSATRTVK QKRRAGGVVA SAAYKKWERA AMAGVSLVAD AAEELERNTV 240 NADARMLSPS SSNACTVDGL GTNHIKEADQ QAPAKLKLQL FPINEATRKA LEKDEHNPHL 300 ELTLSARKKI SSVLEHLNRK WGNSNIASGE LLLFPYCAHQ EDLATYQRWT TKDTVAVADV 360 FLSVNSPSVF RLRYGWFSLA ELEAGVSEIS LTHFENCLIP EDIHAKSPLE ACVQKDGNSL 420 SSCAPEQHPC GSKDQSALLF AMPSSTGKSA QVPEQCIDVL PSQFGRQNQD QVTTNQVFEV 480 DQGMDCAAVS EGEWADTLTD ISVGYLLTEA SRGANTDCPG TSVVKNTLLL ENPCSYDSFD 540 AAVALHASRY KSAEQPALAS HSTIWGAEET CDAFSFNLPA SRKREGSNNS ASSSPDSDSD 600 VHPSNSEGFQ CFLQDLAGAA VAHNPCIDDA KDVESLCAES PPRSDHDSAP KDQSLADLYW 660 PDSLGPLDLD IPSATYHADD LLLGDSQNSW NRMMANSLDA FRNLSFFTAD KNDSIPSIM* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.14693 | 0.0 | callus| flower| leaf| panicle| root| seed| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32988238 | 0.0 | ||||
Expression Atlas | Q10PA6 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os03g13790.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os03g13790 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK102688 | 0.0 | AK102688.1 Oryza sativa Japonica Group cDNA clone:J033102O16, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015632626.1 | 0.0 | TSL-kinase interacting protein 1 | ||||
Refseq | XP_015632627.1 | 0.0 | TSL-kinase interacting protein 1 | ||||
TrEMBL | A0A0E0NS91 | 0.0 | A0A0E0NS91_ORYRU; Uncharacterized protein | ||||
TrEMBL | Q10PA6 | 0.0 | Q10PA6_ORYSJ; Myb family transcription factor, putative, expressed | ||||
STRING | ORUFI03G10280.1 | 0.0 | (Oryza rufipogon) | ||||
STRING | OS03T0241100-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5478 | 36 | 43 | Representative plant | OGRP2164 | 10 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36960.2 | 1e-165 | TSL-kinase interacting protein 1 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os03g13790.1 |
Entrez Gene | 4332208 |