PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g12760.1
Common NameOJ1203D03.3
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 323aa    MW: 34988.3 Da    PI: 5.9802
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g12760.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.34.2e-11157204355
                       HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       + h ++Er+RR+++ + f  L +++P +     kK +K++ L  +++Y+k+L+
  LOC_Os03g12760.1 157 QEHVIAERKRREKLQQQFVALATIVPGL-----KKTDKISLLGSTIDYVKQLE 204
                       5799************************.....9*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.456154203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.8E-9157204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-15158217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-14158219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.45E-10159208No hitNo description
SMARTSM003533.2E-11160209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MSTLSNKVSL SSNLLNLQTG LAEEPEELTY MYHQEEHARM QEQFAGTPLV EQPVRFDQFY  60
PASMAPNQFH PSHCSSFPAF GGSSALPSLA FGAVATTKKE QVQQPSPSSS NVLSFAGQVQ  120
GSTTTLDFSG RGWQQDDGVG VFQQPPERRS RPPANAQEHV IAERKRREKL QQQFVALATI  180
VPGLKKTDKI SLLGSTIDYV KQLEEKVKAL EEGSRRTAEP TTAFESKCRI TVDDDDGGSA  240
SSGTDDGSSS SSSPTVEASI HGNTVLLKIC CKERRGLLVM ILSELEKQGL SIINTSVVPF  300
TDSCLNITIT AKARLALPVY YS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1162167ERKRRE
2163168RKRREK
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ8LSP3
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g12760.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g12760
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0997320.0AC099732.2 Oryza sativa Japonica Group chromosome 3 clone OJ1203D03, complete sequence.
GenBankAK2881570.0AK288157.1 Oryza sativa Japonica Group cDNA, clone: J090001A02, full insert sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880159.10.0transcription factor bHLH18
TrEMBLQ8LSP30.0Q8LSP3_ORYSJ; Helix-loop-helix DNA-binding domain containing protein
STRINGOGLUM03G09410.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64013149
Representative plantOGRP1197445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.14e-30bHLH family protein