PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os03g12490.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | FAR1 | ||||||||
Protein Properties | Length: 764aa MW: 86538.2 Da PI: 7.9751 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 61.1 | 3.4e-19 | 151 | 230 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 fYn YA+ +GF +r+sk++++ + g +++f+C +eg++++ + + tr+gCka++++++++ ++kw+v+ +++eHnHe+ LOC_Os03g12490.1 151 FYNLYARFTGFGIRRSKNRYK-DGGVKSMQEFCCIREGRDNSVT---------GPPTRIGCKAMVRLNRSSeSQKWRVSAFVSEHNHEMK 230 9***************99987.889999**********988754.........569**************99***************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.8E-13 | 151 | 229 | IPR004330 | FAR1 DNA binding domain |
PROSITE profile | PS50966 | 10.237 | 490 | 526 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 2.3E-5 | 491 | 522 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 5.4E-5 | 501 | 528 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 764 aa Download sequence Send to blast |
MSSARSVASP SAARVGGGSS APDVEQQKSV AAVGVSSPVS SSKHHHMAKA EDGTITINGD 60 KQQNPAADRG SYQNPCWTET IFAKIAMEEE GWPEKGGEDH SGQPMDVVPL ERIVVEGEED 120 SDLLPISLSD PAILLPKIGQ TFNEDSDGYA FYNLYARFTG FGIRRSKNRY KDGGVKSMQE 180 FCCIREGRDN SVTGPPTRIG CKAMVRLNRS SESQKWRVSA FVSEHNHEMK RDLQHTKHFR 240 SHNFIDEGTK RNIKEMVDNG MTPTAMYGLL SDNCHQMEVA IKAVWPETIH RVCKWHVLKN 300 AKENLGNIYS KRSSFKQEFH RVLNEPQTEA EFDKAWSDLM EQYNLESSVY LRRMWDMKKK 360 WAPAYFREFF FARMSTTQRS ESMNHVLKKY VKPSSSLHGF AKRYENFYND RIEAEDAEEH 420 DTYNEKVSTL TSSPIEKHAS RVYTRGAFSR FKEQFKLSFS FMVYHTSDQH VLQLVHIGDD 480 TLQSWGSKEF KVQVDLTEQD LSCGCKLFEH LGIICSHIIR VMVQYGFTEI PKKYILKRWT 540 KDARDSIPKH LEESYLKDKE AASSRTYRNT LLHKSALDMV RLGGTSSETY EKTVEVLTKL 600 IGELQVMCTS QVVNNKEIHC GDRTIGKKPT GVQLDDSVDS SDSEPGMSDE FCVADEDGIG 660 QDVSAGEDSV DVDMTDVNEE DILPPEVRRS RGRPRSTRLM SKGETSSKAK KKKASESTSK 720 DESKNHAKGK KESTKQIRYC KQCGGHGHYK STCGRKSSYE RRK* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.12304 | 0.0 | panicle |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | Q10PQ2 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os03g12490.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os03g12490 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC107226 | 0.0 | AC107226.2 Oryza sativa Japonica Group chromosome 3 clone OSJNBa0081P02, complete sequence. | |||
GenBank | AP014959 | 0.0 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | Q10PQ2 | 0.0 | Q10PQ2_ORYSJ; Transposon protein, putative, unclassified |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP15940 | 3 | 5 | Representative plant | OGRP30 | 12 | 351 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 4e-55 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os03g12490.1 |