PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g12120.1
Common NameLOC4332096, OJ1743A09.3, OsJ_09955
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 887aa    MW: 99173.8 Da    PI: 5.0466
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g12120.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM61.23.3e-19691981128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyW 83 
                       lp+G++F+Ptd++l+  +L+++v + +      +  +e+ik+vd      +++P+d+p  ++++    yfF+k+ k+ a++  +++ ++   W
  LOC_Os03g12120.1  69 LPRGVEFNPTDSDLL-WHLAAEVGNGQarrhpfI--NEFIKSVDetigFGYTHPQDIP-GIRQDGCASYFFHKNFKECANE--NSKCIR---W 152
                       699************.789999988886776442..233554443333899*******.666777789******9999864..444445...* PP

               NAM  84 katgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                       +++g+  +++  +g+l g+k+++v+y  + + ++++ tdW +h+y++
  LOC_Os03g12120.1 153 QKSGNPISITL-DGNLQGCKEVFVLYayETDGNNPQITDWRLHQYHI 198
                       ***********.999**********97767888889*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.53E-2561216IPR003441NAC domain
PROSITE profilePS5100521.77569216IPR003441NAC domain
PfamPF023654.1E-870198IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 887 aa     Download sequence    Send to blast
MAKDKEVGPP PPPCVDSDHE DLPLAERRRR LLRPPAESKP PAPERREASA AAAAAEDSGG  60
AAQQGWPGLP RGVEFNPTDS DLLWHLAAEV GNGQARRHPF INEFIKSVDE TIGFGYTHPQ  120
DIPGIRQDGC ASYFFHKNFK ECANENSKCI RWQKSGNPIS ITLDGNLQGC KEVFVLYAYE  180
TDGNNPQITD WRLHQYHIES TEKDEGELVV SKIFYELEKN QFKWAEKSHA QSAQGASAID  240
DDSKEELQLD NHSFNMITEN SSVQGNENKQ KQTQTGTCPN LDKLSYFNVV SNMHIGNQIN  300
DHDEIEELDH MSLQERYRIL MAENHSSSAV VSSEQCAIDG LENSCKPGTN GMIPKRIHEG  360
TAFRDGMYSM LQEISSAPAI IGSIDNDNNR RLLTEGLSNN QQSHEAGCES GFLSTSSSAA  420
PPQCQVVCSH DLLVNGKTLI YSRDPSSSST PTFGDKNIQL EGTDDRTLLV DIKLEPALEG  480
DFTEKITSSV QRTDPNHGTE GSNLVGSINS VSSAISKRIS EAARSNPENS HVEGLLPSSR  540
IKSEVTGSEL PLVVCGLTSI SIAELTAKKT NTLNHDGVLA YCSRKRKRRK TLRDPSEKTL  600
EEDSLRNDEG TAYFSRQRRR RKTATDSIET ALEEDAPGLL QILLDKGILV KEIKLYGVEE  660
EDDMVPDCTE SDFQDLENVI TKLFPQRTSL LKSALRHEKG EKAIYCLTCL ISLIEQSRYL  720
QFRDCPVEWG WCRDLQSFIF IFKSHNRIVL ERPEYGYATY FFEIVKSLPI QWQIQRMVTA  780
MKLSGCGRTA LIENRPLLIG EDLTEGEARV LEEYGWVPNS GLGTMLNYRD RVVHDRWNER  840
SGTDWKTKIG KLLMNGYSEG HLVLSHFPTK VGKIEDDTEI KQEDPL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1583588RKRKRR
2583589RKRKRRK
3584589KRKRRK
4605618RNDEGTAYFSRQRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.492060.0callus| leaf| panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329904920.0
Expression AtlasQ8H824-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g12120.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g12120
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1052830.0AK105283.1 Oryza sativa Japonica Group cDNA clone:001-116-E01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632079.10.0uncharacterized protein LOC4332096
TrEMBLA0A0E0NRR10.0A0A0E0NRR1_ORYRU; Uncharacterized protein
TrEMBLQ8H8240.0Q8H824_ORYSJ; No apical meristem protein, expressed
STRINGORUFI03G08860.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74793239
Representative plantOGRP365846
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14490.19e-40NAC domain containing protein 85