PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g11370.1
Common NameLOC4332037, Os03g0212300
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family B3
Protein Properties Length: 271aa    MW: 30746.5 Da    PI: 8.0056
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g11370.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.52.8e-19231091199
                       HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                       +++  l lp kfa+e g  + ++  l++  e  r W+vk+  +  sg ++l++GW+eF++a++L++g f+vF++dg   f  +v+vf++
  LOC_Os03g11370.1  23 SSKTKLKLPYKFARELGDRELREARLRVAGEGRRPWDVKVFDDDVSGDVYLGRGWQEFARAHDLRDGHFLVFRYDGAAAF--TVTVFDE 109
                       455669**********999999999***************77999999**************************998888..9999986 PP
2B347.92.4e-151712431487
                       T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                       + l +p +f e+h++  +e  +++l   +g+ W+v+l++  r +++r+ ++ GW +F+ +ngL +gD++ F++ ++
  LOC_Os03g11370.1 171 QYLNVPMEFQEAHEYARRE--KVVL-RMRGEAWTVRLKHsrRERGQRTAFRYGWHRFCVDNGLAVGDTCFFRVLRE 243
                       56889********988554..4555.5599*******9876667777*************************6654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.45E-1913116IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.15613110IPR003340B3 DNA binding domain
CDDcd100171.12E-1913108No hitNo description
Gene3DG3DSA:2.40.330.107.8E-2114112IPR015300DNA-binding pseudobarrel domain
SMARTSM010194.8E-1615110IPR003340B3 DNA binding domain
PfamPF023625.4E-1623109IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.0E-24154265IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.46E-16155246IPR015300DNA-binding pseudobarrel domain
SMARTSM010197.1E-5156265IPR003340B3 DNA binding domain
PROSITE profilePS5086312.351158265IPR003340B3 DNA binding domain
PfamPF023623.3E-13172243IPR003340B3 DNA binding domain
CDDcd100172.73E-10173239No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009030anatomycarpel
PO:0007130developmental stagesporophyte reproductive stage
PO:0007606developmental stagegynoecium development stage
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MEDQMANLRL TDFEFFRIIL PGSSKTKLKL PYKFARELGD RELREARLRV AGEGRRPWDV  60
KVFDDDVSGD VYLGRGWQEF ARAHDLRDGH FLVFRYDGAA AFTVTVFDET MCRRDYRRHH  120
DAAESGSSSS SDSSDAAAAV ATAAAEGVGD VALSQFAVTL RQCNLEDKQA QYLNVPMEFQ  180
EAHEYARREK VVLRMRGEAW TVRLKHSRRE RGQRTAFRYG WHRFCVDNGL AVGDTCFFRV  240
LREGDLRRGG AADDHVLKVA VRKADGTTLE *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.70360.0flower| panicle| seed
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329808840.0
Expression AtlasQ10Q26-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g11370.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g11370
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0708610.0AK070861.1 Oryza sativa Japonica Group cDNA clone:J023073O05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628624.10.0B3 domain-containing protein Os03g0212300
SwissprotQ10Q260.0Y3123_ORYSJ; B3 domain-containing protein Os03g0212300
TrEMBLA0A0E0GIW41e-177A0A0E0GIW4_ORYNI; Uncharacterized protein
STRINGOS03T0212300-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47483264
Representative plantOGRP1414234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31690.12e-20B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]