PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g10770.1
Common NameOs03g0205300, OSNPB_030205300
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 325aa    MW: 34667.5 Da    PI: 6.2514
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g10770.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.38.9e-112482881055
                       HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       r+RR+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  LOC_Os03g10770.1 248 RKRRERINERLKILQNLIPNG-----TKVDISTMLEEAVHYVKFLQ 288
                       9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.856238287IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.42E-14241301IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-12243297IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-11244293IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.38E-12247292No hitNo description
PfamPF000104.5E-8248288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MEDSEAMAQL LGVQYFGNDQ EQQQPAAAAP PAMYWPAHDA ADQYYGSAPY CYMQQQQHYG  60
CYDGGAMVAG GDFFVPEEQL VADPSFMVDL NLEFEDQHGG DAGGAGSSAA AAAAATKMTP  120
ACKRKVEDHK DESCTDNVAR KKARSTAATV VQKKGNKNAQ SKKAQKGACS RSSNQKESNG  180
GGDGGNVQSS STNYLSDDDS LSLEMTSCSN VSSASKKSSL SSPATGHGGA KARAGRGAAT  240
DPQSLYARKR RERINERLKI LQNLIPNGTK VDISTMLEEA VHYVKFLQLQ IKLLSSDDMW  300
MFAPIAYNGV NVGLDLKISP PQQQ*
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasA0A0N7KGS8
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g10770.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g10770
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1235680.0AC123568.1 Genomic sequence for Oryza sativa, Nipponbare strain, clone OJ1345H02, from chromosome 3, complete sequence.
GenBankAC1322140.0AC132214.1 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0040M05, from chromosome 3, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629469.10.0transcription factor bHLH85
TrEMBLA0A0N7KGS80.0A0A0N7KGS8_ORYSJ; Os03g0205300 protein
STRINGOS03T0205300-000.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP116802832
Representative plantOGRP1278633
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.11e-45bHLH family protein