PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g09170.1
Common NameLOC4331910, Os03g0191900, OSNPB_030191900
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 298aa    MW: 31792.9 Da    PI: 6.5073
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g09170.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.79.5e-21111161256
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                        y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a++ a+ +l+ge
  LOC_Os03g09170.1 111 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAALAYDSAAFRLRGE 161
                       59******9.**********955...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.73E-35110170No hitNo description
Gene3DG3DSA:3.30.730.105.2E-33111169IPR001471AP2/ERF domain
PROSITE profilePS5103223.696111168IPR001471AP2/ERF domain
SMARTSM003806.1E-39111174IPR001471AP2/ERF domain
SuperFamilySSF541714.18E-23111169IPR016177DNA-binding domain
PRINTSPR003672.5E-11112123IPR001471AP2/ERF domain
PfamPF008476.7E-15112161IPR001471AP2/ERF domain
PRINTSPR003672.5E-11134150IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009030anatomycarpel
PO:0007130developmental stagesporophyte reproductive stage
PO:0007606developmental stagegynoecium development stage
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MATTVDWCGR GSNLPAAMYD MVVDSKELMG ALAPSMVSFS YPCSEQSASS LLAGANYLTP  60
AQVLHVQAQL QRLRRPGAAS GCLAAAPPLP MKRHGAVAVA AAAAARAPVK LYRGVRQRHW  120
GKWVAEIRLP RNRTRLWLGT FDTAEEAALA YDSAAFRLRG ESARLNFPEL RRGGAHLGPP  180
LHAAVDAKLH AICHGMDLPQ PQPQTQSNAT TTTMSTTATN TPSPFFSSES PVVKSEPVCS  240
ASESSSSADG DVSSTGSSDV VPEMQLLDFS EAPWDESESF LLHKYPSLEI DWDAILS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-21107168163ATERF1
3gcc_A8e-21107168163ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.201620.0leaf| panicle| vegetative meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ10QM1
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00585DAPTransfer from AT5G65130Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g09170.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g09170
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1166040.0AC116604.1 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0019D17, from chromosome 3, complete sequence.
GenBankAK2876940.0AK287694.1 Oryza sativa Japonica Group cDNA, clone: J065128M14, full insert sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629130.10.0ethylene-responsive transcription factor RAP2-13
TrEMBLQ10QM10.0Q10QM1_ORYSJ; AP2 domain containing protein, expressed
STRINGOS03T0191900-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38235203
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.13e-43related to AP2 4