PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g09100.1
Common NameLOC4331903
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family CAMTA
Protein Properties Length: 1030aa    MW: 115006 Da    PI: 5.8034
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g09100.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1176.73e-55201363118
              CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptf 94 
                       ke ++rwl+++ei++iL+n+++++++ e+++rp+sgsl+L++rk++ryfrkDG++w+kk+dgktv+E+he+LK g+++vl+cyYah+een +f
  LOC_Os03g09100.1  20 KEaQRRWLRPTEICEILKNYRSFRIAPEPPNRPPSGSLFLFDRKVLRYFRKDGHNWRKKRDGKTVKEAHERLKSGSIDVLHCYYAHGEENINF 112
                       55599**************************************************************************************** PP

              CG-1  95 qrrcywlLeeelekivlvhylevk 118
                       qrr+yw+Lee++ +ivlvhylevk
  LOC_Os03g09100.1 113 QRRSYWMLEEDYMHIVLVHYLEVK 136
                       *********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143782.72715141IPR005559CG-1 DNA-binding domain
SMARTSM010765.2E-7618136IPR005559CG-1 DNA-binding domain
PfamPF038591.6E-4821135IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.105.2E-7440525IPR013783Immunoglobulin-like fold
PfamPF018335.6E-8442517IPR002909IPT domain
SuperFamilySSF812961.57E-17442527IPR014756Immunoglobulin E-set
CDDcd001020.00344442529No hitNo description
SuperFamilySSF484038.71E-17631735IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.203.3E-18633739IPR020683Ankyrin repeat-containing domain
CDDcd002042.19E-13638732No hitNo description
PROSITE profilePS500888.763640672IPR002110Ankyrin repeat
PROSITE profilePS5029718.059640744IPR020683Ankyrin repeat-containing domain
SMARTSM002480.013673702IPR002110Ankyrin repeat
PROSITE profilePS500888.843673705IPR002110Ankyrin repeat
SMARTSM002481400712741IPR002110Ankyrin repeat
SuperFamilySSF525404.78E-8844897IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.075846868IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.407847876IPR000048IQ motif, EF-hand binding site
PfamPF006120.0033848867IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0022869891IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.578870894IPR000048IQ motif, EF-hand binding site
PfamPF006122.0E-4872891IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071275Biological Processcellular response to aluminum ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1030 aa     Download sequence    Send to blast
MAEGRRYAIA PQLDIEQILK EAQRRWLRPT EICEILKNYR SFRIAPEPPN RPPSGSLFLF  60
DRKVLRYFRK DGHNWRKKRD GKTVKEAHER LKSGSIDVLH CYYAHGEENI NFQRRSYWML  120
EEDYMHIVLV HYLEVKAGKL SSRSTGHDDV LQASHADSPL SQLPSQTTEG ESSVSGQASE  180
YDETESDIYS GGARYNSFSR MRQHENGGGS VIDDSIFSSY VPASSVGSYQ GLQATAPNTG  240
FYSHGQDNLP VVLNESDLGT AFNGPNSQFD LSLWIEAMKP DKGTHQIPLY QAPVPSEQSP  300
FTGGPGIESF TFDEVYNNGL SIKDVDGDDT DGETPWQIPN ASGTFATADS FQQNDKTLEE  360
AINYPLLKTQ SSSLSDIIKD SFKKNDSFTR WMSKELAEVD DSQITSSSGV YWNSEEADNI  420
IEASSSDQYT LGPVLAQDQL FTIVDFSPTW TYAGSKTRVF IKGNFLSSDE VKRLKWSCMF  480
GEFEVPAEII ADDTLVCHSP SHKPGRVPFY VTCSNRLACS EVREFDFRPQ YMDAPSPLGS  540
TNKIYLQKRL DKLLSVEQDE IQTTLSNPTK EIIDLSKKIS SLMMNNDDWS ELLKLADDNE  600
PATDDKQDQF LQNRIKEKLH IWLLHKVGDG GKGPSMLDEE GQGVLHLAAA LGYDWAIRPT  660
IAAGVNINFR DAHGWTALHW AAFCGRERTV VALIALGAAP GAVTDPTPSF PSGSTPADLA  720
SANGHKGISG FLAESSLTSH LQTLNLKEAM RSSAGEISGL PGIVNVADRS ASPLAVEGHQ  780
TGSMGDSLGA VRNAAQAAAR IYQVFRMQSF QRKQAVQYED ENGAISDERA MSLLSAKPSK  840
PAQLDPLHAA ATRIQNKFRG WKGRKEFLLI RQRIVKIQAH VRGHQVRKHY RKIIWSVGIV  900
EKVILRWRRR GAGLRGFRPT ENAVTESTSS SSGNVTQNRP AENDYDFLQE GRKQTEERLQ  960
KALARVKSMV QYPDARDQYQ RILTVVTKMQ ESQAMQEKML EESTEMDEGL LMSEFKELWD  1020
DDMPTPGYF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.139030.0callus| flower| leaf| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329766690.0
Expression AtlasQ10QM9-
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, old leaves, petals, sepals, top of carpels, stigmas, stamen filaments, anthers and siliques, but not in pollen. {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:14581622}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in freezing tolerance in association with CAMTA1 and CAMTA3. Contributes together with CAMTA1 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved together with CAMTA3 and CAMTA4 in the positive regulation of a general stress response (PubMed:25039701). Involved in tolerance to aluminum. Binds to the promoter of ALMT1 transporter and contributes to the positive regulation of aluminum-induced expression of ALMT1 (PubMed:25627216). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:23581962, ECO:0000269|PubMed:25039701, ECO:0000269|PubMed:25627216, ECO:0000305|PubMed:11925432}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00043PBMTransfer from AT5G64220Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g09100.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt, wounding, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by aluminum (PubMed:25627216). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:25627216}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g09100
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0666510.0AK066651.1 Oryza sativa Japonica Group cDNA clone:J013074G10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631249.10.0calmodulin-binding transcription activator 1 isoform X2
SwissprotQ6NPP40.0CMTA2_ARATH; Calmodulin-binding transcription activator 2
TrEMBLQ10QM90.0Q10QM9_ORYSJ; Anther ethylene-upregulated protein ER1, putative, expressed
STRINGOS03T0191000-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60838140
Representative plantOGRP5621565
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.20.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]