PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g08930.1
Common NameLOC4331887, OJ1217B09.8, Os03g0188400, OSNPB_030188400
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 330aa    MW: 35262.7 Da    PI: 5.7423
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g08930.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.72.7e-15109160155
                       CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +r++h ++Er+RR+++N+ ++ Lr+l+P +   +s++ + a+i+  A++Y+k+L+
  LOC_Os03g08930.1 109 QRMTHIAVERNRRRQMNEYLAVLRSLMPAS---YSQRGDQASIVGGAINYVKELE 160
                       79****************************...*******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.83E-15107164No hitNo description
PROSITE profilePS5088815.967108159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-14109164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-17109174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-12109160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.1E-12114165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MALEAVVFPQ GHFGYGCGRD SPAYGMPWCD VLAAAGGGGG FGEFYGVDEW DDQLQVASVD  60
EWEVASKDNS DASTEGKAAA AERAEPVAAG RRKRRRTKVV KNKEEIECQR MTHIAVERNR  120
RRQMNEYLAV LRSLMPASYS QRGDQASIVG GAINYVKELE QLLQSLEVQK SLKNRSGAMD  180
AAGDSPFAGF FSFPQYSTSP RTGCSAAASA GSSGSASSVV MDDTAGSAES GRQSAAIADI  240
EVTMVEGHAS LKVLARRRPK QLLKLVVGLQ QLRIPPLHLN VTTVDAMVLY SFSLKVEDDS  300
KLGSVEDIAT AVHQILGSIQ QQEAVLSIS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19195RKRRR
29196RKRRRT
3109120RMTHIAVERNRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.313030.0panicle| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329927640.0
Expression AtlasQ8H7N8-
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g08930.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g08930
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1075550.0AK107555.1 Oryza sativa Japonica Group cDNA clone:002-130-B03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629273.10.0transcription factor bHLH96
SwissprotQ9C7T41e-82BH096_ARATH; Transcription factor bHLH96
TrEMBLQ8H7N80.0Q8H7N8_ORYSJ; BHLH transcription factor
STRINGOS03T0188400-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74138156
Representative plantOGRP25315131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.13e-59bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]