PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os03g08754.1 | ||||||||
Common Name | LOC4331872 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 251aa MW: 27910.4 Da PI: 6.5749 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 79.6 | 2.1e-25 | 29 | 78 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n rqvtfskRr g++KKAeELS+LCdaev +++fs tgkl+ ++s LOC_Os03g08754.1 29 RIDNLAARQVTFSKRRRGLFKKAEELSILCDAEVGLVVFSATGKLFQFAS 78 89*********************************************986 PP | |||||||
2 | K-box | 39.7 | 2.1e-14 | 110 | 191 | 18 | 99 |
K-box 18 qqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 + a+Lk+e+ + +R++ Ge+L++L++++Lq+Le+ Le++l ++ ++K++ +l++i+ l +k +l een +L+++l+ LOC_Os03g08754.1 110 SSTCARLKEELAETSLRLRQMRGEELHRLNVEQLQELEKSLESGLGSVLKTKSKKILDEIDGLERKRMQLIEENLRLKEQLQ 191 66789**********99*************************************************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.1E-33 | 20 | 79 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 27.319 | 20 | 80 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 22 | 76 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 5.1E-29 | 22 | 94 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 8.84E-38 | 22 | 93 | No hit | No description |
PRINTS | PR00404 | 5.9E-25 | 22 | 42 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.8E-24 | 29 | 76 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.9E-25 | 42 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.9E-25 | 57 | 78 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 11.889 | 106 | 198 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 1.5E-12 | 111 | 190 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009266 | Biological Process | response to temperature stimulus | ||||
GO:0009910 | Biological Process | negative regulation of flower development | ||||
GO:0010076 | Biological Process | maintenance of floral meristem identity | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0048438 | Biological Process | floral whorl development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000900 | Molecular Function | translation repressor activity, nucleic acid binding | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MAGGGGGGGR GEGEGRAATG KRERIAIRRI DNLAARQVTF SKRRRGLFKK AEELSILCDA 60 EVGLVVFSAT GKLFQFASTS MEQIIDRYNS HSKTLQRAEP SQLDLQGEDS STCARLKEEL 120 AETSLRLRQM RGEELHRLNV EQLQELEKSL ESGLGSVLKT KSKKILDEID GLERKRMQLI 180 EENLRLKEQL QVSRMSRMEE MQPGPDSEIV YEEGQSSESV TNASYPRPPP DNDYSSDTSL 240 RLGLSLFSSK * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 3e-20 | 22 | 92 | 3 | 73 | MEF2C |
5f28_B | 3e-20 | 22 | 92 | 3 | 73 | MEF2C |
5f28_C | 3e-20 | 22 | 92 | 3 | 73 | MEF2C |
5f28_D | 3e-20 | 22 | 92 | 3 | 73 | MEF2C |
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Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.22281 | 0.0 | callus| leaf| root| seed| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 116011576 | 0.0 | ||||
Expression Atlas | Q10QR6 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, shoots and developing panicles. {ECO:0000269|PubMed:15682279}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00272 | DAP | Transfer from AT2G22540 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os03g08754.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os03g08754 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY345222 | 0.0 | AY345222.1 Oryza sativa (japonica cultivar-group) transcription factor MADS47-2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015630610.1 | 1e-180 | MADS-box transcription factor 47 isoform X1 | ||||
Swissprot | Q5K4R0 | 1e-176 | MAD47_ORYSJ; MADS-box transcription factor 47 | ||||
TrEMBL | Q10QR6 | 1e-178 | Q10QR6_ORYSJ; SHORT VEGETATIVE PHASE protein, putative, expressed | ||||
STRING | ORGLA03G0061100.1 | 1e-178 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1221 | 36 | 97 | Representative plant | OGRP6076 | 11 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22540.1 | 1e-66 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os03g08754.1 |
Entrez Gene | 4331872 |
Publications ? help Back to Top | |||
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