PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g08620.1
Common NameLOC4331858, Os03g0184500, OsJ_09687, OSJNBa0032G08.2
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family B3
Protein Properties Length: 238aa    MW: 26568.6 Da    PI: 9.7246
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g08620.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.93.3e-17137227199
                       EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                       f+k +++s+v +  +l lp++f+e++  k   +  +tl de+ ++++ ++    ++++  l++GW +F+ ++gL +gD  vF+l++ ++f  +
  LOC_Os03g08620.1 137 FVKPMLHSHVVRGFWLGLPRHFCETYLPK--HDAIVTLLDEKDEQFDTNY--LAYKNG--LSGGWAGFALDHGLLDGDATVFQLVKPTTF--K 221
                       89************************422..4568***************..566555..9**********************9986666..9 PP

                       EEEE-S CS
                B3  94 vkvfrk 99 
                       v+++r+
  LOC_Os03g08620.1 222 VHIIRA 227
                       999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.0E-20128228IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.12E-24130227IPR015300DNA-binding pseudobarrel domain
CDDcd100173.39E-26135226No hitNo description
PROSITE profilePS5086311.857137228IPR003340B3 DNA binding domain
PfamPF023621.4E-15137227IPR003340B3 DNA binding domain
SMARTSM010198.6E-19137228IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009049anatomyinflorescence
PO:0001083developmental stageinflorescence development stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MGMGMEKGMT AYEAARERTV EENKRKMEAL NLRHLSAAIA VAPKTPSPMK QKRRRIIEAA  60
VVAPSPPRRS RRLANLPEVK YAEVAPDGAE RMKRSPRKAI DSIYLATRGS ISMEARLEAA  120
RKAEELESQL DPEFPSFVKP MLHSHVVRGF WLGLPRHFCE TYLPKHDAIV TLLDEKDEQF  180
DTNYLAYKNG LSGGWAGFAL DHGLLDGDAT VFQLVKPTTF KVHIIRATVD DGNEVTK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15155KRRRI
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.90790.0callus| panicle| vegetative meristem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO379916400.0
Expression AtlasQ10QS9-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g08620.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g08620
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1220170.0AK122017.1 Oryza sativa Japonica Group cDNA clone:J033111M07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633231.11e-176B3 domain-containing protein Os03g0184500
SwissprotQ10QS91e-177Y3845_ORYSJ; B3 domain-containing protein Os03g0184500
TrEMBLA0A0D3FEQ21e-175A0A0D3FEQ2_9ORYZ; Uncharacterized protein
TrEMBLA0A0D9Z3281e-175A0A0D9Z328_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0G2D51e-175A0A0E0G2D5_ORYNI; Uncharacterized protein
TrEMBLA0A0E0NQP11e-175A0A0E0NQP1_ORYRU; Uncharacterized protein
TrEMBLI1P8A41e-175I1P8A4_ORYGL; Uncharacterized protein
STRINGOGLUM03G06210.11e-176(Oryza glumipatula)
STRINGORUFI03G06050.11e-176(Oryza rufipogon)
STRINGOS03T0184500-011e-176(Oryza sativa)
STRINGONIVA02G06710.11e-176(Oryza nivara)
STRINGORGLA03G0060000.11e-176(Oryza glaberrima)
STRINGOBART03G06210.11e-176(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP175638103
Representative plantOGRP9951658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.13e-48B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]