PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g08500.2
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 333aa    MW: 38017.7 Da    PI: 11.7413
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g08500.2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.11.8e-1796145255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       +y+GVr+++ +g+W+AeIrdp+    +  r++lg+f  ae Aa a++ a+++++g
  LOC_Os03g08500.2  96 QYRGVRRRP-WGKWAAEIRDPV----KgIRVWLGTFTNAEAAALAYDDAARAIRG 145
                       69*******.**********75....44***********************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.45E-1695153No hitNo description
SuperFamilySSF541712.75E-2196154IPR016177DNA-binding domain
PROSITE profilePS5103223.39396153IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-3096154IPR001471AP2/ERF domain
PfamPF008474.4E-1096145IPR001471AP2/ERF domain
SMARTSM003804.9E-3496159IPR001471AP2/ERF domain
PRINTSPR003672.0E-1297108IPR001471AP2/ERF domain
PRINTSPR003672.0E-12135155IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MCGGAILAEL IPSAPAARRV TAGHVWPGDA NKAKKKGARA DDFEAAFRDF DNDSDDEEMM  60
VEEAEEEEAT SEHKPFVFRA KKAAAAASSR RRKPAQYRGV RRRPWGKWAA EIRDPVKGIR  120
VWLGTFTNAE AAALAYDDAA RAIRGDRAKL NFPSATTPDT RKRGRATAAA APAVKATPVI  180
NLVEEEDEEE DRAGGHHRLR LRRRHRRAVR RAAVRRPVQP LQRRRLRVPG QPVQRRRRAD  240
HRRRRRRRPG HGALELRRRL LPRRRRGQLV LLGSSRRLRR PCDSILYHVM YIEEWFCQAS  300
MCSSWFLSVM KNYVRLLVLV KDLFGCAFDA KI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-2093153263ATERF1
3gcc_A5e-2093153263ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
190102RRKPAQYRGVRRR
2235248RRRADHRRRRRRRP
3237246RADHRRRRRR
4237247RADHRRRRRRR
5241247RRRRRRR
6241258RRRRRRRPGHGALELRRR
7245265RRRPGHGALELRRRLLPRRRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.128890.0callus| flower| leaf| panicle| root| seed| stem| vegetative meristem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO565675860.0
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g08500.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g08500
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU4056910.0CU405691.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C112O04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632219.11e-130ethylene-responsive transcription factor ERF073
TrEMBLQ10QU21e-128Q10QU2_ORYSJ; AP2 domain containing protein, expressed
TrEMBLQ5MFV01e-128Q5MFV0_ORYSI; BTH-induced ERF transcriptional factor 4
STRINGOS03T0183300-011e-129(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43712654
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.31e-16ERF family protein