PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g08500.1
Common NameLOC4331848, Os03g0183300, OsJ_09678, OSJNBa0032G08.12, OSNPB_030183300
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 330aa    MW: 35304.8 Da    PI: 4.3121
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g08500.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.21.8e-1796145255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       +y+GVr+++ +g+W+AeIrdp+    +  r++lg+f  ae Aa a++ a+++++g
  LOC_Os03g08500.1  96 QYRGVRRRP-WGKWAAEIRDPV----KgIRVWLGTFTNAEAAALAYDDAARAIRG 145
                       69*******.**********75....44***********************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.57E-1695153No hitNo description
SuperFamilySSF541712.68E-2196154IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.3E-3096154IPR001471AP2/ERF domain
PROSITE profilePS5103223.39396153IPR001471AP2/ERF domain
PfamPF008474.3E-1096145IPR001471AP2/ERF domain
SMARTSM003804.9E-3496159IPR001471AP2/ERF domain
PRINTSPR003672.0E-1297108IPR001471AP2/ERF domain
PRINTSPR003672.0E-12135155IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009071anatomyanther wall tapetum
PO:0001029developmental stageE tetrad stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MCGGAILAEL IPSAPAARRV TAGHVWPGDA NKAKKKGARA DDFEAAFRDF DNDSDDEEMM  60
VEEAEEEEAT SEHKPFVFRA KKAAAAASSR RRKPAQYRGV RRRPWGKWAA EIRDPVKGIR  120
VWLGTFTNAE AAALAYDDAA RAIRGDRAKL NFPSATTPDT RKRGRATAAA APAVKATPVI  180
NLVEEEDEEE VAAAMASIKY EPETSESSES NALPDFSWQG MSASDEFAVA AAALSLDSDD  240
DLAKKRPRTE PEDTTDSGSG DDTDALFDAL LFADQYNHFN GGAYESLDSL FSADAVQTTA  300
AAAAADQGMG LWSFDDGCCL VDVEASLSF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-2093153263ATERF1
3gcc_A1e-2093153263ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
190102RRKPAQYRGVRRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.128890.0callus| flower| leaf| panicle| root| seed| stem| vegetative meristem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO565675860.0
Expression AtlasQ10QU2-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g08500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g08500
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0796330.0AC079633.9 Genomic Sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0032G08, from Chromosome 3, complete sequence.
GenBankAK1059220.0AK105922.1 Oryza sativa Japonica Group cDNA clone:001-205-A05, full insert sequence.
GenBankAK1061630.0AK106163.1 Oryza sativa Japonica Group cDNA clone:001-208-B04, full insert sequence.
GenBankAK1195530.0AK119553.1 Oryza sativa Japonica Group cDNA clone:001-208-C04, full insert sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankAY8313950.0AY831395.1 Oryza sativa (indica cultivar-group) BTH-induced ERF transcriptional factor 4 (BIERF4) mRNA, complete cds.
GenBankGU1203460.0GU120346.1 Oryza sativa Japonica Group clone KCS329C04 EREBP-like protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632219.10.0ethylene-responsive transcription factor ERF073
TrEMBLQ10QU20.0Q10QU2_ORYSJ; AP2 domain containing protein, expressed
TrEMBLQ5MFV00.0Q5MFV0_ORYSI; BTH-induced ERF transcriptional factor 4
STRINGOS03T0183300-010.0(Oryza sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.38e-17ERF family protein