PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os03g08490.1 | ||||||||
Common Name | LOC4331847, OSJNBa0032G08.13 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | ERF | ||||||||
Protein Properties | Length: 322aa MW: 33806.4 Da PI: 4.7462 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.3 | 1.9e-18 | 91 | 141 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y GVr+++ +g+W+AeIrdp+e r++lg+f tae Aa a++aa++ l+g LOC_Os03g08490.1 91 SKYWGVRRRP-WGKWAAEIRDPVE---GVRVWLGTFATAEAAAHAYDAAARDLRG 141 79********.**********866...3************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.7E-11 | 91 | 141 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.10E-14 | 91 | 148 | No hit | No description |
SuperFamily | SSF54171 | 6.54E-22 | 91 | 150 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 4.7E-33 | 92 | 155 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-30 | 92 | 151 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.472 | 92 | 149 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.1E-9 | 93 | 104 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.1E-9 | 115 | 131 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 322 aa Download sequence Send to blast |
MCGGAILANI IPATPPRPAT AAHVWPGGDG EKRRKVGGGG CDDDFEAAFE RFGREDSEME 60 EEEVEEVVVG KKAAVRRRRA TPAAGRRARP SKYWGVRRRP WGKWAAEIRD PVEGVRVWLG 120 TFATAEAAAH AYDAAARDLR GATAKLNFPS SSSSTAATPR PRKCRPTTAT ATPKATTPNV 180 VVVVNLVDKE AEVSESSGAS SSALPDFSWQ GMSASSDDDA AAQQALLDAA GGAKKRPRSE 240 PHVTSDDEVL PASFDSDNNT AAAGLLPLDD PFLFGDQFGD LNGGAFASLM DGLFAAGEAN 300 VAGESVGLWS FGDDFLNASY Y* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 4e-18 | 88 | 153 | 10 | 76 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.23028 | 0.0 | callus| leaf| panicle| root |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32992196 | 0.0 | ||||
Expression Atlas | Q94HF5 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os03g08490.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os03g08490 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC079633 | 0.0 | AC079633.9 Genomic Sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0032G08, from Chromosome 3, complete sequence. | |||
GenBank | AP014959 | 0.0 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015630586.1 | 0.0 | ethylene-responsive transcription factor ERF073 | ||||
TrEMBL | Q94HF5 | 0.0 | Q94HF5_ORYSJ; AP2 domain containing protein, expressed | ||||
STRING | ONIVA03G06100.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4371 | 26 | 54 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72360.1 | 6e-18 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os03g08490.1 |
Entrez Gene | 4331847 |