PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g07940.1
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 414aa    MW: 45040.5 Da    PI: 10.9157
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g07940.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.87.1e-15220269355
               AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  LOC_Os03g07940.1 220 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 269
                       9***************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103210.42892183IPR001471AP2/ERF domain
SMARTSM003807.2E-598189IPR001471AP2/ERF domain
SuperFamilySSF541713.73E-8147185IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.2E-7153184IPR001471AP2/ERF domain
CDDcd000182.29E-22218279No hitNo description
SuperFamilySSF541716.21E-18218279IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.3E-18219277IPR001471AP2/ERF domain
PROSITE profilePS5103219.203219277IPR001471AP2/ERF domain
SMARTSM003802.9E-33219283IPR001471AP2/ERF domain
PfamPF008479.9E-10220269IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MRHRQAAQAS CRTTDHLRRS KTISSCLPMA STSWAHRTQW RRRRCTTPAA AAAASSTDPC  60
RSPASSRGSG RQCTCRNGQR RRCRSPCRPL PRARRRCRRR RCRWSASPLR RSGRGRHSSV  120
ASPDIDGLED TRLTCGTTLA GRKARPGKEG KFEGGYDKEE KAARAYDLAA LKYWGPTTHI  180
NFPLSTYEKE LEEMKHMTRQ EFIAHLRRNS SGFSRGASMY RGVTRHHQHG RWQARIGRVA  240
GNKDLYLGTF STQEEAAEAY DIAAIKFRGL NAVTNFDISK YDVKRICSST HLIGGDLACR  300
RSPTRMLPPD APAGAAGVDV VVAPGDHQQI SAGGGGASDN SDTASDGHRG AHLLHGLQYA  360
HAMKFEAGES SGGGGGDGAT TNWMAAAAAA ARPVAGIPTT VHHQLPVFAL WND*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
179100RRRCRSPCRPLPRARRRCRRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g07940.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g07940
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6851150.0AY685115.1 Oryza sativa (japonica cultivar-group) transcription factor AP2D14 (AP2D14) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629390.11e-171AP2-like ethylene-responsive transcription factor AIL5
TrEMBLA0A0E0CW071e-177A0A0E0CW07_9ORYZ; Uncharacterized protein
STRINGOMERI03G05320.11e-179(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79738151
Representative plantOGRP11217209
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.19e-85AP2 family protein