PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os03g07880.2 | ||||||||
Common Name | Os03g0174900, OsHAP2C, OSNPB_030174900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | NF-YA | ||||||||
Protein Properties | Length: 210aa MW: 23162.4 Da PI: 10.0294 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 107.3 | 1.2e-33 | 107 | 163 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy++Il+RRq Rakle+e+kl k+rkpylheSRh+hA++R+Rg+gGrF LOC_Os03g07880.2 107 EEPIYVNAKQYHAILRRRQLRAKLEAENKL-VKNRKPYLHESRHQHAMKRARGTGGRF 163 69****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 5.8E-39 | 105 | 166 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 38.283 | 106 | 166 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 4.1E-29 | 108 | 163 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 3.3E-25 | 109 | 131 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 111 | 131 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 3.3E-25 | 140 | 163 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010262 | Biological Process | somatic embryogenesis | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009089 | anatomy | endosperm | ||||
PO:0007042 | developmental stage | whole plant fruit formation stage | ||||
PO:0007633 | developmental stage | endosperm development stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MQSLFASTLL KLCDISFLLV LMLGNLDGYT KSDEGKMMSA LSLGKSETVY AHSEPDRSQP 60 FGISYPYADS FYGGAVATYG THAIMHPQIV GVMSSSRVPL PIEPATEEPI YVNAKQYHAI 120 LRRRQLRAKL EAENKLVKNR KPYLHESRHQ HAMKRARGTG GRFLNTKQQP EASDGGTPRL 180 VSANGVVFSK HEHSLSSSDL HHRRAKEGA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 5e-25 | 107 | 177 | 2 | 74 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.3426 | 0.0 | callus| flower| leaf| panicle| root| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | Q10R12 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the whole plant, except roots. {ECO:0000269|PubMed:11867211}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os03g07880.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os03g07880 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB288029 | 0.0 | AB288029.1 Oryza sativa Japonica Group OsHAP2C mRNA for HAP2 subunit of HAP complex, complete cds. | |||
GenBank | AK069348 | 0.0 | AK069348.1 Oryza sativa Japonica Group cDNA clone:J023014B08, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015631822.1 | 1e-136 | nuclear transcription factor Y subunit A-7 | ||||
Swissprot | Q9LNP6 | 2e-37 | NFYA8_ARATH; Nuclear transcription factor Y subunit A-8 | ||||
TrEMBL | Q10R12 | 1e-153 | Q10R12_ORYSJ; CCAAT-binding transcription factor subunit B family protein, expressed | ||||
STRING | OS03T0174900-01 | 1e-154 | (Oryza sativa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G17590.4 | 9e-40 | nuclear factor Y, subunit A8 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os03g07880.2 |
Publications ? help Back to Top | |||
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