PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g07830.1
Common NameDREB2E, ERF41, Os03g0174400
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 319aa    MW: 33456.5 Da    PI: 6.3088
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g07830.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.96.7e-202776255
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                       y+GVr++  +g+WvAeIr+p   +kr+r +lg+f taeeAa a+++a+++l+g
  LOC_Os03g07830.1 27 EYRGVRQRT-WGKWVAEIREP---NKRTRLWLGSFATAEEAALAYDEAARRLYG 76
                      69****999.**********9...337*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.10E-282686No hitNo description
PROSITE profilePS5103222.552784IPR001471AP2/ERF domain
SMARTSM003801.8E-362790IPR001471AP2/ERF domain
PfamPF008477.0E-142776IPR001471AP2/ERF domain
SuperFamilySSF541714.18E-212785IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.0E-302785IPR001471AP2/ERF domain
PRINTSPR003673.1E-102839IPR001471AP2/ERF domain
PRINTSPR003673.1E-105066IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020104anatomyleaf sheath
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MESYGRKRAW KKGPTRGKGG PQNAACEYRG VRQRTWGKWV AEIREPNKRT RLWLGSFATA  60
EEAALAYDEA ARRLYGPDAF LNLPHLRAAS AAAAHQRLRW LPASAAAAAA RGGAAAVPAY  120
GLLNLNAQHN VHVIHQRLQE LKNSSSSPTK PPPRTPTRAN PPPPPLPTSS PCSTVTNSVG  180
SAALPPPMSC FQALEQAMAA TAAMESAPCD DDAAVVGFGA DKPQLDLKEF LQQIGVLKAD  240
DDGATGKNGA VHGDDGELAD AFGFGGSGEF DWDALAADMS DIAGGHGGAL GANGGFQMDD  300
LHEVEQFGGC MPIPIWDI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-162884663ATERF1
3gcc_A2e-162884663ATERF1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO2976004010.0
Expression AtlasQ10R18-
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that binds to the DNA sequence 5'-[AG]CCGAC-3' of the cis-acting dehydration-responsive element (DRE). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00411DAPTransfer from AT3G57600Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g07830.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by high-salt and drought stresses. {ECO:0000269|PubMed:20049613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g07830
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0904840.0AC090484.4 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0061L19, from chromosome 3, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025879844.10.0dehydration-responsive element-binding protein 2E
SwissprotQ10R180.0DRE2E_ORYSJ; Dehydration-responsive element-binding protein 2E
TrEMBLA0A0D9Z2T50.0A0A0D9Z2T5_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0NQE60.0A0A0E0NQE6_ORYRU; Uncharacterized protein
STRINGOGLUM03G05490.10.0(Oryza glumipatula)
STRINGORUFI03G05330.10.0(Oryza rufipogon)
STRINGOS03T0174400-000.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP95752939
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57600.11e-42ERF family protein
Publications ? help Back to Top
  1. Matsukura S, et al.
    Comprehensive analysis of rice DREB2-type genes that encode transcription factors involved in the expression of abiotic stress-responsive genes.
    Mol. Genet. Genomics, 2010. 283(2): p. 185-96
    [PMID:20049613]