PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g07540.1
Common NameBHLH153, ILI3, LOC4331778, Os03g0171700, OsJ_09590
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 92aa    MW: 9951.17 Da    PI: 8.5174
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g07540.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.13.2e-0818581554
                      HHHHHHHHHHCTSCCC....TTS-STCHHHHHHHHHHHHHH CS
               HLH 15 riNsafeeLrellPkas.kapskKlsKaeiLekAveYIksL 54
                      +iN+ +++L+ llP++s + ++ + s +  L++++ YIksL
  LOC_Os03g07540.1 18 EINELISKLQALLPESSrSRGASRSSASKLLKETCSYIKSL 58
                      7**************664888888****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.693358IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-91776IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.71E-91782IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-51858IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0040008Biological Processregulation of growth
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009047anatomystem
PO:0007010developmental stagewhole plant fruit ripening stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 92 aa     Download sequence    Send to blast
MSSRRGGGGG GGRITDEEIN ELISKLQALL PESSRSRGAS RSSASKLLKE TCSYIKSLHR  60
EVDDLSDRLS ELMSTMDNNS PQAEIIRSLL R*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1412RGGGGGGGR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.757731e-150callus| leaf| panicle
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ10R47
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. {ECO:0000250}.
UniProtAtypical and probable non DNA-binding bHLH transcription that integrates multiple signaling pathways to regulate cell elongation and plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g07540.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g07540
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2416741e-153AK241674.1 Oryza sativa Japonica Group cDNA, clone: J065192H12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630063.11e-57transcription factor ILI3
SwissprotA2XD159e-59ILI3_ORYSI; Transcription factor ILI3
SwissprotQ10R479e-59ILI3_ORYSJ; Transcription factor ILI3
TrEMBLA0A0D3FEE92e-56A0A0D3FEE9_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0CVV32e-56A0A0E0CVV3_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0GHH02e-56A0A0E0GHH0_ORYNI; Uncharacterized protein
TrEMBLA0A0E0NQC72e-56A0A0E0NQC7_ORYRU; Uncharacterized protein
TrEMBLI1P8172e-56I1P817_ORYGL; Uncharacterized protein
STRINGORUFI03G05150.14e-57(Oryza rufipogon)
STRINGOS03T0171700-014e-57(Oryza sativa)
STRINGONIVA03G05190.14e-57(Oryza nivara)
STRINGORGLA03G0051300.14e-57(Oryza glaberrima)
STRINGOBART03G05370.14e-57(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92838145
Representative plantOGRP8216416
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26945.11e-23bHLH family protein
Publications ? help Back to Top
  1. Carretero-Paulet L, et al.
    Genome-wide classification and evolutionary analysis of the bHLH family of transcription factors in Arabidopsis, poplar, rice, moss, and algae.
    Plant Physiol., 2010. 153(3): p. 1398-412
    [PMID:20472752]