PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os03g07450.1 | ||||||||
Common Name | HOX21, LOC4331774, Os03g0170600, OSJNBa0091P11.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 367aa MW: 39623.7 Da PI: 6.9045 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.5 | 4.7e-18 | 130 | 183 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe +++ e++ +LA+ lgL+ rqV +WFqNrRa++k LOC_Os03g07450.1 130 KKRRLNVEQVRTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWK 183 4568999**********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 128.9 | 2e-41 | 129 | 220 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ekkrrl+ eqv++LE++Fe +kLeperK++lar+Lglqprqva+WFqnrRAR+ktkqlEkdy+aLkr++da+k+en++L +++++L++e+ LOC_Os03g07450.1 129 EKKRRLNVEQVRTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKTKQLEKDYDALKRQLDAVKAENDALLNHNKKLQAEIV 220 69**************************************************************************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.5E-19 | 122 | 187 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.41 | 125 | 185 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.2E-17 | 128 | 189 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.98E-17 | 130 | 186 | No hit | No description |
Pfam | PF00046 | 2.2E-15 | 130 | 183 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 8.2E-19 | 132 | 193 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 1.3E-5 | 156 | 165 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 160 | 183 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.3E-5 | 165 | 181 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 4.9E-14 | 185 | 225 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009744 | Biological Process | response to sucrose | ||||
GO:0048826 | Biological Process | cotyledon morphogenesis | ||||
GO:0080022 | Biological Process | primary root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009047 | anatomy | stem | ||||
PO:0007010 | developmental stage | whole plant fruit ripening stage | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 367 aa Download sequence Send to blast |
MASNGMASSP SSFFPPNFLL HMAQQQAAPP HDPQEHHHHH HHGHHGHHHE QQQQQQHHHH 60 LGPPPPPPPH PHNPFLPSSA QCPSLQEFRG MAPMLGKRPM SYGDGGGGGD EVNGGGEDEL 120 SDDGSQAGEK KRRLNVEQVR TLEKNFELGN KLEPERKMQL ARALGLQPRQ VAIWFQNRRA 180 RWKTKQLEKD YDALKRQLDA VKAENDALLN HNKKLQAEIV ALKGREAASE LINLNKETEA 240 SCSNRSENSS EINLDISRTP PPDAAALDTA PTAHHHHHGG GGGGGGGGGM IPFYTSIARP 300 ASGGGVDIDQ LLHSSSGGAG GPKMEHHGGG GNVQAASVDT ASFGNLLCGV DEPPPFWPWP 360 DHQHFH* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 177 | 185 | RRARWKTKQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.59424 | 0.0 | panicle| root |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | Q8S7W9 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf blades and panicles. {ECO:0000269|PubMed:17999151}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00225 | DAP | Transfer from AT1G69780 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os03g07450.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os03g07450 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC073556 | 0.0 | AC073556.11 Oryza sativa chromosome 3 BAC OSJNBa0091P11 genomic sequence, complete sequence. | |||
GenBank | AC144491 | 0.0 | AC144491.1 Oryza sativa Japonica Group chromosome 3 clone OSJNAa0091P11, complete sequence. | |||
GenBank | AP014959 | 0.0 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015629266.1 | 0.0 | homeobox-leucine zipper protein HOX21 | ||||
Swissprot | Q8S7W9 | 0.0 | HOX21_ORYSJ; Homeobox-leucine zipper protein HOX21 | ||||
TrEMBL | A0A0E0NQB8 | 0.0 | A0A0E0NQB8_ORYRU; Uncharacterized protein | ||||
TrEMBL | F4MFH0 | 0.0 | F4MFH0_ORYSJ; DNA-binding protein, putative, expressed | ||||
STRING | ORUFI03G05090.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2289 | 38 | 94 | Representative plant | OGRP129 | 16 | 189 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69780.1 | 1e-70 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os03g07450.1 |
Entrez Gene | 4331774 |
Publications ? help Back to Top | |||
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