PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LOC_Os03g07360.1

Common Name

LOC4331765, Os03g0169600, OsJ_09572, OSJNBa0091P11.8, OSNPB_030169600

Organism

Oryza sativa subsp. japonica

Taxonomic ID

39947

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

Dof

Protein Properties

Length: 441aa MW: 47001.7 Da PI: 7.8021

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LOC_Os03g07360.1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.8	1.3e-39	102	162	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC s++tkfCyynny+++qPr+fCk+C+ryWt+GGa+rnvPvG+grrk+k++s LOC_Os03g07360.1 102 PDKILPCPRCSSMDTKFCYYNNYNINQPRHFCKNCQRYWTAGGAMRNVPVGAGRRKSKSVS 162 7899*****************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	7.0E-32	98	159	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.6E-32	104	160	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.761	106	160	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	108	144	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0020039	anatomy	leaf lamina

Sequence ? help Back to Top
Protein Sequence Length: 441 aa Download sequence Send to blast
MGECKVGGGG GGGDCLIKLF GKTIPVPEPG ACAAGDVDKD LQHSGSSTTE PKTQENTVQD 60 STSPPPQPEV VDTEDSSADK NSSENQQQQG DTANQKEKLK KPDKILPCPR CSSMDTKFCY 120 YNNYNINQPR HFCKNCQRYW TAGGAMRNVP VGAGRRKSKS VSAASHFLQR VRAALPGDPP 180 LYAPVKTNGT VLSFGSDLST LDLTEQMKHL KDKFIPTTGI KNTDEMPVGL CAEGLSKTEE 240 SNQTNLKEKV SADRSPNVAQ HPCMNGGAMW PFGVAPPPAY YTSSIAIPFY PAAAAAVAAY 300 WGCMVPGAWN APWPPQSQSQ SVSSSSAASP VSTMTNCFRL GKHPRDGDEE LDSKGNGKVW 360 VPKTVRIDDV DEVARSSIWS LIGIKGDKVG ADHGRGCKLA KVFESKDEAK ASTHTAISSL 420 PFMQGNPAAL TRSVTFQEGS *

Sequence ? help Back to Top

Protein Sequence Length: 441 aa Download sequence Send to blast

MGECKVGGGG GGGDCLIKLF GKTIPVPEPG ACAAGDVDKD LQHSGSSTTE PKTQENTVQD  60
STSPPPQPEV VDTEDSSADK NSSENQQQQG DTANQKEKLK KPDKILPCPR CSSMDTKFCY  120
YNNYNINQPR HFCKNCQRYW TAGGAMRNVP VGAGRRKSKS VSAASHFLQR VRAALPGDPP  180
LYAPVKTNGT VLSFGSDLST LDLTEQMKHL KDKFIPTTGI KNTDEMPVGL CAEGLSKTEE  240
SNQTNLKEKV SADRSPNVAQ HPCMNGGAMW PFGVAPPPAY YTSSIAIPFY PAAAAAVAAY  300
WGCMVPGAWN APWPPQSQSQ SVSSSSAASP VSTMTNCFRL GKHPRDGDEE LDSKGNGKVW  360
VPKTVRIDDV DEVARSSIWS LIGIKGDKVG ADHGRGCKLA KVFESKDEAK ASTHTAISSL  420
PFMQGNPAAL TRSVTFQEGS *

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.11987	0.0	callus\| flower\| leaf\| panicle\| root\| seed\| stem

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	116632052	0.0
Expression Atlas	Q8S7W1	-

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LOC_Os03g07360.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Phenotype -- Mutation ? help Back to Top
Source	ID
RiceGE	Os03g07360

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK060900	0.0	AK060900.1 Oryza sativa Japonica Group cDNA clone:001-035-D05, full insert sequence.
GenBank	AK104523	0.0	AK104523.1 Oryza sativa Japonica Group cDNA clone:006-303-F03, full insert sequence.
GenBank	AY224429	0.0	AY224429.1 Oryza sativa (japonica cultivar-group) isolate 20575 putative H-protein promoter binding factor-2a mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015631794.1	0.0	cyclic dof factor 1
TrEMBL	A0A0E0NQA6	0.0	A0A0E0NQA6_ORYRU; Uncharacterized protein
TrEMBL	Q8S7W1	0.0	Q8S7W1_ORYSJ; Dof domain, zinc finger family protein, expressed
STRING	ORUFI03G04990.1	0.0	(Oryza rufipogon)
STRING	OS03T0169600-01	0.0	(Oryza sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2099	37	93
Representative plant	OGRP38	17	445

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	3e-66	cycling DOF factor 2

Link Out ? help Back to Top
Phytozome	LOC_Os03g07360.1
Entrez Gene	4331765

Publications ? help Back to Top
Cooper B, et al. A network of rice genes associated with stress response and seed development. Proc. Natl. Acad. Sci. U.S.A., 2003. 100(8): p. 4945-50 [PMID:12684538]