PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g06860.1
Common NameOs03g0164400, OSNPB_030164400
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 553aa    MW: 64765.4 Da    PI: 8.4228
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g06860.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR185.86.4e-2714104290
              FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                       fYn+YAke GFsvrk++s++ + +g i +++f+Cs+eg+r+e   + + ++r++ra t++gC+a++++k+++ +g+w+vt+++ +HnH+l+
  LOC_Os03g06860.1  14 FYNQYAKEKGFSVRKDYSRRDRFSGLIFHKRFTCSREGFRKEVYMDySGRTREPRALTHCGCNAHFEIKLDEiKGHWYVTRFVADHNHPLC 104
                       9*****************************************99887889999*************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.1E-2514104IPR004330FAR1 DNA binding domain
PfamPF105515.8E-36226320IPR018289MULE transposase domain
PROSITE profilePS509668.345503541IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009009anatomyplant embryo
PO:0001081developmental stagemature plant embryo stage
PO:0007042developmental stagewhole plant fruit formation stage
Sequence ? help Back to Top
Protein Sequence    Length: 553 aa     Download sequence    Send to blast
MAMKFSSEDE GFAFYNQYAK EKGFSVRKDY SRRDRFSGLI FHKRFTCSRE GFRKEVYMDY  60
SGRTREPRAL THCGCNAHFE IKLDEIKGHW YVTRFVADHN HPLCKADEVA FLRSHRRITP  120
AQQAKLVELR DLGLHQHQVM DVIERDHGGF EGAGFVTRDL YNFFVKMKKK RIDGGDADRV  180
IKYMQARQKD DMDFYYEYET DEAGCLKRLF WADPQSRIDY DAFGDVVVFD STYRVNKYNL  240
PFIPFVGVNH HGSTVIFGCA VVSDERVGTY EWVLKQFLSC MCQKHPKSVI TDGDNAMRRA  300
ILLVFPNSDH RLCTWHIEQN MARNLSPTML SDFRVLVHAP LEEDEFERKW VEFKVKHKVS  360
DENRWLNRMY NLRKKWAAAY TKGRVFLGMK SNQRSESLNS KLHRLLDRKM SLVILIEHYE  420
HCLSRMRHQE AELDAKASQS VPFTSNDSTL IEKDAARVFT PKIFKKVKVE LYMGMNWEVI  480
DTIEEDNCVR YVLQMIGKDG VVILTGMFEE ALLVSICCPC RKMECEYIPC NHLFAVLKLF  540
KVRHHSDLLH ST*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.1008620.0callus
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329733840.0
Expression AtlasA0A0P0VTG9-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g06860.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g06860
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1044280.0AC104428.2 Oryza sativa Japonica Group chromosome 3 clone OJ1123F12, complete sequence.
GenBankAK0633660.0AK063366.1 Oryza sativa Japonica Group cDNA clone:001-114-D10, full insert sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632970.10.0protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A0P0VTG90.0A0A0P0VTG9_ORYSJ; Os03g0164400 protein (Fragment)
TrEMBLQ10RC20.0Q10RC2_ORYSJ; Transposon protein, putative, unclassified, expressed
STRINGOS03T0164400-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.13e-98FAR1-related sequence 5