PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g06850.4
Common NameOJ1123F12.9, Os03g0164300, OsJ_09529
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family B3
Protein Properties Length: 92aa    MW: 10439.1 Da    PI: 8.4747
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g06850.4genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3383e-123891396
                      TT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEE CS
                B3 13 sgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkv 96
                      ++ +++  +f e++     g++   +  ++ +  + +s++++l+ r k++r +lt+GW++  +a+  +egD+++F++++  +   l+v+v
  LOC_Os03g06850.4  3 NAKMTFAVQFSERYinkyiGSP--IDDLMVSMAGTTQSYQMRLK-RSKDSRAMLTTGWNQLIDAKAFDEGDVCLFHFKEVdDVLVLKVHV 89
                      5667888888888887664333..33344445567799999993.4444459************************98765666555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508639.516191IPR003340B3 DNA binding domain
PfamPF023629.8E-10486IPR003340B3 DNA binding domain
CDDcd100177.02E-8591No hitNo description
Gene3DG3DSA:2.40.330.102.3E-10790IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.53E-91189IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009009anatomyplant embryo
PO:0001081developmental stagemature plant embryo stage
PO:0007042developmental stagewhole plant fruit formation stage
Sequence ? help Back to Top
Protein Sequence    Length: 92 aa     Download sequence    Send to blast
MTNAKMTFAV QFSERYINKY IGSPIDDLMV SMAGTTQSYQ MRLKRSKDSR AMLTTGWNQL  60
IDAKAFDEGD VCLFHFKEVD DVLVLKVHVL K*
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasB7EIH2
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g06850.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g06850
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0708451e-153AK070845.1 Oryza sativa Japonica Group cDNA clone:J023070F17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotB7EIH23e-64Y3643_ORYSJ; B3 domain-containing protein Os03g0164300
TrEMBLB8ANX36e-61B8ANX3_ORYSI; Uncharacterized protein
STRINGOGLUM01G49620.17e-57(Oryza glumipatula)
STRINGORUFI03G04510.13e-57(Oryza rufipogon)
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]