PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os03g06850.2 | ||||||||
Common Name | OJ1123F12.9, Os03g0164300, OsJ_09529 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | B3 | ||||||||
Protein Properties | Length: 92aa MW: 10439.1 Da PI: 8.4747 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 38 | 3e-12 | 3 | 89 | 13 | 96 |
TT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEE CS B3 13 sgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkv 96 ++ +++ +f e++ g++ + ++ + + +s++++l+ r k++r +lt+GW++ +a+ +egD+++F++++ + l+v+v LOC_Os03g06850.2 3 NAKMTFAVQFSERYinkyiGSP--IDDLMVSMAGTTQSYQMRLK-RSKDSRAMLTTGWNQLIDAKAFDEGDVCLFHFKEVdDVLVLKVHV 89 5667888888888887664333..33344445567799999993.4444459************************98765666555555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 9.516 | 1 | 91 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 9.8E-10 | 4 | 86 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 7.02E-8 | 5 | 91 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 2.3E-10 | 7 | 90 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.53E-9 | 11 | 89 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0001081 | developmental stage | mature plant embryo stage | ||||
PO:0007042 | developmental stage | whole plant fruit formation stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 92 aa Download sequence Send to blast |
MTNAKMTFAV QFSERYINKY IGSPIDDLMV SMAGTTQSYQ MRLKRSKDSR AMLTTGWNQL 60 IDAKAFDEGD VCLFHFKEVD DVLVLKVHVL K* |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | B7EIH2 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os03g06850.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os03g06850 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK070845 | 1e-153 | AK070845.1 Oryza sativa Japonica Group cDNA clone:J023070F17, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Swissprot | B7EIH2 | 3e-64 | Y3643_ORYSJ; B3 domain-containing protein Os03g0164300 | ||||
TrEMBL | B8ANX3 | 6e-61 | B8ANX3_ORYSI; Uncharacterized protein | ||||
STRING | OGLUM01G49620.1 | 7e-57 | (Oryza glumipatula) | ||||
STRING | ORUFI03G04510.1 | 3e-57 | (Oryza rufipogon) |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os03g06850.2 |
Publications ? help Back to Top | |||
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