PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g06630.2
Common NameHSF08, HSF7, HSFA2D, OJ1607A12.12, Os03g0161900, OsJ_009160
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family HSF
Protein Properties Length: 360aa    MW: 41134.6 Da    PI: 6.9769
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g06630.2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1011.1e-31381282101
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
      HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                       Fl+k+++++ d++++ ++sw + g+sfvv+d++ fa   Lp++Fkh+nf+SFvRQLn+YgF+k++ ++         weF+++ F +g+++ll
  LOC_Os03g06630.2  38 FLTKTFDLVADPATDGVVSWGRAGSSFVVWDPHVFAAVFLPRFFKHNNFSSFVRQLNTYGFRKIDPDR---------WEFANDGFLRGQRHLL 121
                       9****************************************************************999.........**************** PP

                       XXXXXXX CS
      HSF_DNA-bind  95 ekikrkk 101
                       + ikr++
  LOC_Os03g06630.2 122 KMIKRRR 128
                       *****97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.106.1E-3634127IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004157.5E-5734127IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.26E-3434127IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.1E-2938127IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.4E-183861IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.4E-187688IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434077101IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.4E-1889101IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020039anatomyleaf lamina
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MEKMMPGMVK EEWPPSSPEE GEAPRPMEGL HEVGPPPFLT KTFDLVADPA TDGVVSWGRA  60
GSSFVVWDPH VFAAVFLPRF FKHNNFSSFV RQLNTYGFRK IDPDRWEFAN DGFLRGQRHL  120
LKMIKRRRPL SYLPGSQQAL GTCLEVGQFG LDEEIDRLKR DKNILLAEVV KLRHKQQSTK  180
ANMRAMEERL QHAEQKQVQM MGFLARAMQN PDFFHQLIHQ QDKMKGLEDT FSKKRTRSID  240
IVPFLNPGEV SQGDQLESTL LFDPRPFAEL NDEPAKSELE NLALNIQGLG KGKQDVNRTR  300
NQPRNQASNE TELTDDFWEE LLNEGARDDA GIPGMERRRP RYVDALAQKL GYLSNSSQK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-243612718120Heat shock factor protein 1
5hdg_A3e-24361278110Heat shock factor protein 1
5hdn_A3e-24361278110Heat shock factor protein 1
5hdn_B3e-24361278110Heat shock factor protein 1
5hdn_C3e-24361278110Heat shock factor protein 1
5hdn_D3e-24361278110Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1120126LKMIKRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.400210.0flower| leaf| panicle| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329768620.0
Expression AtlasQ8H7Y6-
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g06630.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:18064488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Interaction ? help Back to Top
Source Intact With
IntActSearch Q8H7Y6
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g06630
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1057290.0AC105729.2 Oryza sativa Japonica Group chromosome 3 clone OJ1607A12, complete sequence.
GenBankAK0668440.0AK066844.1 Oryza sativa Japonica Group cDNA clone:J013088J01, full insert sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankAY3444890.0AY344489.1 Oryza sativa (japonica cultivar-group) heat shock factor RHSF7 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006649439.20.0PREDICTED: heat stress transcription factor A-2d
SwissprotQ8H7Y60.0HFA2D_ORYSJ; Heat stress transcription factor A-2d
TrEMBLA0A0D3FE470.0A0A0D3FE47_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0GH510.0A0A0E0GH51_ORYNI; Uncharacterized protein
STRINGONIVA03G04400.10.0(Oryza nivara)
STRINGOBART03G04630.10.0(Oryza barthii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-102heat shock transcription factor A6B
Publications ? help Back to Top
  1. Baniwal SK, et al.
    Heat stress response in plants: a complex game with chaperones and more than twenty heat stress transcription factors.
    J. Biosci., 2004. 29(4): p. 471-87
    [PMID:15625403]
  2. Yokotani N, et al.
    Expression of rice heat stress transcription factor OsHsfA2e enhances tolerance to environmental stresses in transgenic Arabidopsis.
    Planta, 2008. 227(5): p. 957-67
    [PMID:18064488]
  3. Guo J, et al.
    Genome-wide analysis of heat shock transcription factor families in rice and Arabidopsis.
    J Genet Genomics, 2008. 35(2): p. 105-18
    [PMID:18407058]
  4. Mittal D, et al.
    Binding affinities and interactions among different heat shock element types and heat shock factors in rice (Oryza sativa L.).
    FEBS J., 2011. 278(17): p. 3076-85
    [PMID:21729241]