PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os03g06630.1 | ||||||||
Common Name | HSF08, HSF7, HSFA2D, OJ1607A12.12, Os03g0161900, OsJ_009160 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | HSF | ||||||||
Protein Properties | Length: 380aa MW: 43706.6 Da PI: 8.902 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 91.3 | 1.2e-28 | 38 | 148 | 2 | 101 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTT............XTTSEEEE CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksks............kekiweFk 82 Fl+k+++++ d++++ ++sw + g+sfvv+d++ fa Lp++Fkh+nf+SFvRQLn+Y +++ +k+s + +++ weF+ LOC_Os03g06630.1 38 FLTKTFDLVADPATDGVVSWGRAGSSFVVWDPHVFAAVFLPRFFKHNNFSSFVRQLNTYFLVRTNYLNKRS-HfyslrfqgfrkiDPDRWEFA 129 9**********************************************************888888777664.358888877765449****** PP ESXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 83 hksFkkgkkellekikrkk 101 ++ F +g+++ll+ ikr++ LOC_Os03g06630.1 130 NDGFLRGQRHLLKMIKRRR 148 *****************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 4.7E-33 | 34 | 147 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 1.5E-30 | 34 | 147 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 8.0E-46 | 34 | 147 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.7E-13 | 38 | 61 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 1.4E-26 | 38 | 147 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.7E-13 | 76 | 88 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.7E-13 | 89 | 101 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0020039 | anatomy | leaf lamina |
Sequence ? help Back to Top |
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Protein Sequence Length: 380 aa Download sequence Send to blast |
MEKMMPGMVK EEWPPSSPEE GEAPRPMEGL HEVGPPPFLT KTFDLVADPA TDGVVSWGRA 60 GSSFVVWDPH VFAAVFLPRF FKHNNFSSFV RQLNTYFLVR TNYLNKRSHF YSLRFQGFRK 120 IDPDRWEFAN DGFLRGQRHL LKMIKRRRPL SYLPGSQQAL GTCLEVGQFG LDEEIDRLKR 180 DKNILLAEVV KLRHKQQSTK ANMRAMEERL QHAEQKQVQM MGFLARAMQN PDFFHQLIHQ 240 QDKMKGLEDT FSKKRTRSID IVPFLNPGEV SQGDQLESTL LFDPRPFAEL NDEPAKSELE 300 NLALNIQGLG KGKQDVNRTR NQPRNQASNE TELTDDFWEE LLNEGARDDA GIPGMERRRP 360 RYVDALAQKL GYLSNSSQK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 5e-21 | 36 | 147 | 18 | 120 | Heat shock factor protein 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 140 | 146 | LKMIKRR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.40021 | 0.0 | flower| leaf| panicle| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32976862 | 0.0 | ||||
Expression Atlas | Q8H7Y6 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os03g06630.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat stress. {ECO:0000269|PubMed:18064488}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Interaction ? help Back to Top | ||||||
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Source | Intact With | |||||
IntAct | Search Q8H7Y6 |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os03g06630 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY344489 | 0.0 | AY344489.1 Oryza sativa (japonica cultivar-group) heat shock factor RHSF7 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006649439.2 | 0.0 | PREDICTED: heat stress transcription factor A-2d | ||||
Swissprot | Q8H7Y6 | 0.0 | HFA2D_ORYSJ; Heat stress transcription factor A-2d | ||||
TrEMBL | A0A0D3FE47 | 0.0 | A0A0D3FE47_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0GH51 | 0.0 | A0A0E0GH51_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA03G04400.1 | 0.0 | (Oryza nivara) | ||||
STRING | OBART03G04630.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP308 | 37 | 231 | Representative plant | OGRP96 | 17 | 233 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22830.1 | 2e-97 | heat shock transcription factor A6B |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os03g06630.1 |
Publications ? help Back to Top | |||
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