PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g05590.1
Common NameLOC4331633, Os03g0150200, OSJNBb0050N02.16, OSNPB_030150200
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 142aa    MW: 15268.7 Da    PI: 6.7995
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g05590.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.52.2e-201364155
               AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      s y+GVr ++ +g+++AeIrdp  +   +r++lg+f+taeeAa+a+++a+ +++g
  LOC_Os03g05590.1 13 SSYRGVRKRP-WGKFAAEIRDPERG--GARVWLGTFDTAEEAARAYDRAAFAMKG 64
                      67********.**********8333..4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.6E-151364IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-231372IPR016177DNA-binding domain
PROSITE profilePS5103224.211472IPR001471AP2/ERF domain
SMARTSM003804.4E-351478IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-321472IPR001471AP2/ERF domain
PRINTSPR003674.7E-121526IPR001471AP2/ERF domain
CDDcd000182.25E-281572No hitNo description
PRINTSPR003674.7E-123854IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020048anatomymicrospore
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
MEDDKSKEGK SSSSYRGVRK RPWGKFAAEI RDPERGGARV WLGTFDTAEE AARAYDRAAF  60
AMKGATAMLN FPGDHHHGAA SRMTSTGSSS SSFTTPPPAN SSAAAGRGGS DRTTDKVELE  120
CLDDKVLEDL LAETNYRDKN Y*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-281572663ATERF1
3gcc_A2e-281572663ATERF1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO334400190.0
Expression AtlasQ8H075-
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g05590.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g05590
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1057340.0AC105734.2 Oryza sativa Japonica Group chromosome 3 clone OSJNBb0050N02, complete sequence.
GenBankAC1376350.0AC137635.2 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0038D20, from chromosome 3, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankAY3393760.0AY339376.1 Oryza sativa (japonica cultivar-group) Ap23 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630244.11e-100ethylene-responsive transcription factor ERF096
SwissprotQ9LTC52e-33ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A0E0GGV91e-98A0A0E0GGV9_ORYNI; Uncharacterized protein
TrEMBLA0A0E0NPR81e-98A0A0E0NPR8_ORYRU; Uncharacterized protein
TrEMBLA2XCK61e-98A2XCK6_ORYSI; Uncharacterized protein
TrEMBLQ8H0751e-98Q8H075_ORYSJ; AP2 domain containing protein, expressed
STRINGORUFI03G03630.12e-99(Oryza rufipogon)
STRINGOS03T0150200-002e-99(Oryza sativa)
STRINGONIVA03G03670.12e-99(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.18e-21ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]