PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g04310.1
Common NameLOC4331538, Os03g0135700, OsJ_09317, OSNPB_030135700
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 355aa    MW: 37889.6 Da    PI: 4.5815
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g04310.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH375.9e-12185227754
                       HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
               HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                       ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  +++Y+k+L
  LOC_Os03g04310.1 185 MAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDTIDYVKEL 227
                       79*********************66......****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.129178227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-16183256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.4E-13184233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-15185248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.56E-5185232No hitNo description
PfamPF000101.7E-9185227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MELDEESFLD ELMSLRRDGS APWQAPPYPG GGGGGGGGGM MMSDLLFYGG DGGSAEARGG  60
MDASPFQELA SMAAPPPQHP HEEFNFDCLS EVCNPYRSCG AQLVPSEAAS QTQTQLTPLR  120
DAMVAEEETS GDKALLHGGG GSSSPTFMFG GGAGESSEMM AGIRGVGGGV HPRSKLHGTP  180
SKNLMAERRR RKRLNDRLSM LRSIVPKISK MDRTSILGDT IDYVKELTER IKTLEEEIGV  240
TPEELDLLNT MKDSSSGNNN EMLVRNSTKF DVENRGSGNT RIEICCPANP GVLLSTVSAL  300
EVLGLEIEQC VVSCFSDFGM QASCLQEDGK RQVVSTDEIK QTLFRSAGYG GRCL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1186193ERRRRKRL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.58600.0callus| panicle| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329889880.0
Expression AtlasQ10S44-
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Broadly expressed. {ECO:0000269|PubMed:17088607}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g04310.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g04310
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0600290.0AK060029.1 Oryza sativa Japonica Group cDNA clone:006-303-F08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629094.10.0transcription factor bHLH93
SwissprotQ9LSL19e-63BH093_ARATH; Transcription factor bHLH93
TrEMBLQ10S440.0Q10S44_ORYSJ; Basic helix-loop-helix, putative, expressed
STRINGOS03T0135700-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13023799
Representative plantOGRP26361130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.15e-65beta HLH protein 93
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sharma N, et al.
    NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis.
    Development, 2016. 143(4): p. 682-90
    [PMID:26758694]
  4. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]