PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os03g04070.1 | ||||||||
Common Name | LOC4331520, Os03g0133000, OsJ_09306, OSNPB_030133000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | NAC | ||||||||
Protein Properties | Length: 317aa MW: 34927.3 Da PI: 7.7186 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 157.3 | 6.2e-49 | 19 | 145 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 pGfrFhPt+eel+++yL + v gkkl++ ++i +++iy+++PwdLp ++k +e+ewyfF++rd+k+ +g r+nr+t++g+Wkatg+d+++ s+ LOC_Os03g04070.1 19 PGFRFHPTEEELLDFYLSRVVLGKKLHF-NIIGTLNIYRHDPWDLPGMAKIGEREWYFFVPRDRKAGNGGRPNRTTERGFWKATGSDRAIRSS 110 9*************************99.89***************888999****************************************9 PP NAM 96 ..kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++glkktLvfy+grap+g+ktdWvm+eyrl LOC_Os03g04070.1 111 gdPKRVIGLKKTLVFYQGRAPRGTKTDWVMNEYRL 145 766778***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.7E-58 | 11 | 170 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.552 | 17 | 170 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.4E-25 | 19 | 145 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0045792 | Biological Process | negative regulation of cell size | ||||
GO:0048281 | Biological Process | inflorescence morphogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009066 | anatomy | anther | ||||
PO:0001004 | developmental stage | anther development stage | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 317 aa Download sequence Send to blast |
MAAAVAVAGP SMEVEQDLPG FRFHPTEEEL LDFYLSRVVL GKKLHFNIIG TLNIYRHDPW 60 DLPGMAKIGE REWYFFVPRD RKAGNGGRPN RTTERGFWKA TGSDRAIRSS GDPKRVIGLK 120 KTLVFYQGRA PRGTKTDWVM NEYRLPDYGA ARAAAPPPKE DMVLCKIYRK ATPLKELEQR 180 ASAMEEMQRG SSHGDYTATR ASLVHDASAS TGDDYFSSDD VHDSGFLIQS SSSSAAPSGS 240 SSKNGGAGAP REAKKEEADV TVTVASATSL QLPAVSQLPS LQLPAMDWLQ DPFLTQLRSP 300 WQDQHCLSPY AHLLYY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 8e-50 | 19 | 172 | 19 | 167 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 8e-50 | 19 | 172 | 19 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 8e-50 | 19 | 172 | 19 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 8e-50 | 19 | 172 | 19 | 167 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-49 | 19 | 172 | 22 | 170 | NAC domain-containing protein 19 |
3swm_B | 1e-49 | 19 | 172 | 22 | 170 | NAC domain-containing protein 19 |
3swm_C | 1e-49 | 19 | 172 | 22 | 170 | NAC domain-containing protein 19 |
3swm_D | 1e-49 | 19 | 172 | 22 | 170 | NAC domain-containing protein 19 |
3swp_A | 1e-49 | 19 | 172 | 22 | 170 | NAC domain-containing protein 19 |
3swp_B | 1e-49 | 19 | 172 | 22 | 170 | NAC domain-containing protein 19 |
3swp_C | 1e-49 | 19 | 172 | 22 | 170 | NAC domain-containing protein 19 |
3swp_D | 1e-49 | 19 | 172 | 22 | 170 | NAC domain-containing protein 19 |
4dul_A | 8e-50 | 19 | 172 | 19 | 167 | NAC domain-containing protein 19 |
4dul_B | 8e-50 | 19 | 172 | 19 | 167 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.21395 | 0.0 | callus| leaf| panicle |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32992299 | 0.0 | ||||
Expression Atlas | Q10S65 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269|PubMed:26834774}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os03g04070.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269|PubMed:26834774}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os03g04070 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK107090 | 0.0 | AK107090.1 Oryza sativa Japonica Group cDNA clone:002-121-G12, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015630174.1 | 0.0 | NAC domain-containing protein 22-like | ||||
Swissprot | Q10S65 | 0.0 | NAC22_ORYSJ; NAC domain-containing protein 22 | ||||
TrEMBL | A0A0D3FDG0 | 0.0 | A0A0D3FDG0_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0NPA5 | 0.0 | A0A0E0NPA5_ORYRU; Uncharacterized protein | ||||
TrEMBL | A2XC49 | 0.0 | A2XC49_ORYSI; Uncharacterized protein | ||||
TrEMBL | I1P797 | 0.0 | I1P797_ORYGL; Uncharacterized protein | ||||
STRING | ORUFI03G02380.1 | 0.0 | (Oryza rufipogon) | ||||
STRING | OS03T0133000-01 | 0.0 | (Oryza sativa) | ||||
STRING | ORGLA03G0024300.1 | 0.0 | (Oryza glaberrima) | ||||
STRING | OBART03G02620.1 | 0.0 | (Oryza barthii) | ||||
STRING | OBART03G02630.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1770 | 38 | 105 | Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G17040.1 | 7e-88 | NAC domain containing protein 36 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os03g04070.1 |
Entrez Gene | 4331520 |
Publications ? help Back to Top | |||
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