PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g03550.1
Common NameLOC4331479, OJ1015F07.12, Os03g0127500, OSNPB_030127500
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bZIP
Protein Properties Length: 427aa    MW: 45185.3 Da    PI: 5.9584
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g03550.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_129.51.6e-09277334562
                       CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 
                       kr +r   NR +A rs +RK  +i+eLe+kv+ L++e + L  +l +++  +a l ++
  LOC_Os03g03550.1 277 KRVKRVLANRQSAARSKERKMRYIAELEQKVQILQSEATNLSAQLTMMQRDSAGLATQ 334
                       999***************************************9999988888777666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.1E-15273337IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.599275338IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.26E-11277328No hitNo description
PfamPF001701.7E-8277335IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1703.0E-10277334No hitNo description
CDDcd147032.70E-22278329No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009030anatomycarpel
PO:0007130developmental stagesporophyte reproductive stage
PO:0007606developmental stagegynoecium development stage
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MNGGIGDALM QPQHVQVMSS SLPMVASTFV AEPAAAANKP RAAGLPPTPP QVFAAQRAAA  60
AAGGDVCMEE SAQGGGGGLP PRKAHRRSSS DVPFGYLAGQ HQLLPPKVEA GWGHLGAGAG  120
GAAAADDLFN AYLNLEGLDG LNSSDDRHDE GDSRGSSIKT NGADSSENES EECADDTRGG  180
IRLWSADGGE RREGVKRNAA GEPATAPLAR HARSLSMDSL IGKFNFTAGT AAAAGNGVAL  240
GPNRFSLEFG SGEFTPSEMK KIMADEKLAE MALADPKRVK RVLANRQSAA RSKERKMRYI  300
AELEQKVQIL QSEATNLSAQ LTMMQRDSAG LATQNNELKF RLHAMEQQAQ LRDALNEALT  360
TEVQRLKLAT AELGDSCSSS SLAQQIQLNA QNQMFQLQQQ QATQIPFYQL QQSQQNGAAK  420
NNESKE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.181780.0callus| panicle
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ8S5V5
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g03550.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g03550
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1044270.0AC104427.2 Oryza sativa Japonica Group chromosome 3 clone OJ1015F07, complete sequence.
GenBankAC1444260.0AC144426.1 Oryza sativa Japonica Group chromosome 3 clone OJA1015F07, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627932.10.0transcription factor RF2b-like
TrEMBLA0A0E0NP460.0A0A0E0NP46_ORYRU; Uncharacterized protein
TrEMBLQ8S5V50.0Q8S5V5_ORYSJ; BZIP family transcription factor, putative, expressed
STRINGORUFI03G01930.10.0(Oryza rufipogon)
STRINGOS03T0127500-000.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35363576
Representative plantOGRP12617181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38900.33e-87bZIP family protein