PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os03g03164.3 | ||||||||
Common Name | HOS66, LOC4331449, Os03g0123500, OsJ_008895, OsJ_008896, OsJ_09228 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | TALE | ||||||||
Protein Properties | Length: 197aa MW: 22831.9 Da PI: 6.6856 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 24.4 | 4.9e-08 | 136 | 179 | 14 | 54 |
HHHHHHH...HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 14 eLeelFe...knrypsaeereeLAkklgLterqVkvWFqNrRak 54 +L++ + k +yp+++++++L +++gL+ +q+ +WF N+R + LOC_Os03g03164.3 136 ILKQWWQqhsKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 179 5555555222469*****************************87 PP | |||||||
2 | ELK | 26.2 | 1.8e-09 | 100 | 121 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK +L++++++++ ++++E++ LOC_Os03g03164.3 100 ELKIELKQGFKSRIEDVREEIL 121 9*******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01256 | 2.4E-11 | 3 | 43 | IPR005541 | KNOX2 |
Pfam | PF03791 | 3.5E-12 | 3 | 42 | IPR005541 | KNOX2 |
PROSITE profile | PS51213 | 9.132 | 100 | 120 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 11.693 | 120 | 183 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.48E-16 | 122 | 187 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 4.9E-10 | 122 | 187 | IPR001356 | Homeobox domain |
CDD | cd00086 | 7.18E-11 | 123 | 184 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.0E-25 | 127 | 186 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 5.2E-18 | 140 | 179 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0010192 | Biological Process | mucilage biosynthetic process | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009047 | anatomy | stem | ||||
PO:0007010 | developmental stage | whole plant fruit ripening stage | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence Send to blast |
MQAQYMMLLC SFREQLQQHV RVHAVEAVMA CREIEQSLQD LTGATLEEGT GATMSEDEDE 60 TAPMLEGPMD MGSDGHDLMG FGPLMPTDSE RSLMERVRQE LKIELKQGFK SRIEDVREEI 120 LRKRRAGKLP GDTTTILKQW WQQHSKWPYP TEDDKAKLVE ETGLQLKQIN NWFINQRKRN 180 WHNNSQTSTL KSKRKR* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 176 | 195 | RKRNWHNNSQTSTLKSKRKR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.4164 | 0.0 | flower| leaf| root| seed| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 14149140 | 0.0 | ||||
Expression Atlas | Q94LW3 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in embryo at 3 days after pollination (DAP). {ECO:0000269|PubMed:10095070}. | |||||
Uniprot | TISSUE SPECIFICITY: Isoform 1 is expressed in roots and flowers, and at lower levels in leaf blades and leaf sheaths. Isoform 2 is expressed in roots and flowers. {ECO:0000269|PubMed:12034492}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os03g03164.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os03g03164 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB007629 | 0.0 | AB007629.1 Oryza sativa Japonica Group HOS66 mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015628919.1 | 1e-143 | homeobox protein knotted-1-like 3 | ||||
Swissprot | Q94LW3 | 1e-145 | KNOS3_ORYSJ; Homeobox protein knotted-1-like 3 | ||||
TrEMBL | A0A0D3FD67 | 1e-144 | A0A0D3FD67_9ORYZ; Uncharacterized protein | ||||
TrEMBL | B8ALY8 | 1e-142 | B8ALY8_ORYSI; Uncharacterized protein | ||||
STRING | ORUFI03G01570.2 | 1e-143 | (Oryza rufipogon) | ||||
STRING | OS03T0123500-02 | 1e-143 | (Oryza sativa) | ||||
STRING | ONIVA03G01480.2 | 1e-143 | (Oryza nivara) | ||||
STRING | ORGLA03G0016000.1 | 1e-143 | (Oryza glaberrima) | ||||
STRING | OBART03G01840.3 | 1e-145 | (Oryza barthii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62990.1 | 1e-107 | KNOTTED-like homeobox of Arabidopsis thaliana 7 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os03g03164.3 |
Entrez Gene | 4331449 |
Publications ? help Back to Top | |||
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