PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g03000.1
Common NameOJ1126B12.2
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 292aa    MW: 30711.1 Da    PI: 9.9644
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g03000.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.92.1e-14115166155
                       CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +r++h ++Er+RR+ +N+ ++ Lr+l+P++   + ++ + a+++  A++Y+k+L+
  LOC_Os03g03000.1 115 QRMTHIAVERNRRRLMNDHLASLRSLIPSN---YIPRGDQATVVGGAIDYVKQLE 166
                       79****************************...9*******************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.7E-15106173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.0E-14113169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.78E-12113166No hitNo description
PROSITE profilePS5088815.142114165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-11115166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.9E-10120171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MEQWAAAAAA DQAAASAGAG QMPFLALLHG AMEADGGGGG DGRKRHAAAA AFASCCPCPP  60
VADLDLLESC VTQAAAPPVT APATRAERRR KRPRPRPRAA PPPEKRKKPE EAENQRMTHI  120
AVERNRRRLM NDHLASLRSL IPSNYIPRGD QATVVGGAID YVKQLEQQLV ALQAAAAERS  180
GVGVVAAAAT AASDGVFVSP QYTSYSEARG GSGVDVEATA AVGGHVRVRV AGRRWTGRLV  240
RAVAAMEDLR LTVLHLAVTS VGHDAVVYCF NLKVKTTTTL HHLLLHVPSF F*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18797RRRKRPRPRPR
28995RKRPRPR
389107RKRPRPRPRAAPPPEKRKK
49094KRPRP
5115126RMTHIAVERNRR
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ8H8H9
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g03000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g03000
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0986950.0AC098695.2 Oryza sativa Japonica Group chromosome 3 clone OJ1126B12, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629439.20.0transcription factor bHLH57
TrEMBLQ8H8H90.0Q8H8H9_ORYSJ; Helix-loop-helix DNA-binding domain containing protein
STRINGORGLA03G0015000.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79573344
Representative plantOGRP1417044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46810.11e-29bHLH family protein