PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os03g02800.1 | ||||||||
Common Name | LOC9270943, OJ1263H11.11, Os03g0119966, OsJ_09200, OSNPB_030119966, RIM1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | NAC | ||||||||
Protein Properties | Length: 651aa MW: 72833.4 Da PI: 6.4741 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 182.6 | 9.4e-57 | 6 | 133 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lppGfrFhPtdeel+ +yLk+k++g+++el e+i+evd+yk+ePwdLp k + +++ ewyfFs+rd+ky++g+r+nratk+gyWkatgkd++ LOC_Os03g02800.1 6 LPPGFRFHPTDEELIIYYLKRKINGRQIEL-EIIPEVDLYKCEPWDLPeKsFLPSKDLEWYFFSPRDRKYPNGSRTNRATKAGYWKATGKDRK 97 79****************************.99**************95334455777*********************************** PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 v s ++++vg+kktLv+y+grap+g++tdWvmheyrl LOC_Os03g02800.1 98 VNS-QRRAVGMKKTLVYYRGRAPHGSRTDWVMHEYRL 133 ***.8999***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.27E-64 | 4 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 61.547 | 6 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.5E-29 | 7 | 133 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 651 aa Download sequence Send to blast |
MAPVSLPPGF RFHPTDEELI IYYLKRKING RQIELEIIPE VDLYKCEPWD LPEKSFLPSK 60 DLEWYFFSPR DRKYPNGSRT NRATKAGYWK ATGKDRKVNS QRRAVGMKKT LVYYRGRAPH 120 GSRTDWVMHE YRLDERECET DTGLQDAYAL CRVFKKTAPG PKIIEHYGVV HHHVEQPQWM 180 TSSIDRSPTL DVSCDGRGDD FESSSFSFPT ETPMDSMHGG FGMQMSAPHE DGKWMQFLSE 240 DAFNATNPFL TNPVSANFSC LPSKVDVALE CARLQHRLTL PPLEVEDFPQ DVSLDTKIGI 300 LRSNPNEVDI LQEFLSVATA SQELINGSTS SYPEMWLGAS TSSASYVNEL SSLVEMGGVG 360 TSNHHESARL QVEIADMEVF KDEKKRVENL RGVKLVNNDL GEIVVEGDES NPTEDIIAQY 420 PIKVTADNSG EAGHRMTDPT DVGGIDTAPI FSQSQPDDFA AGFDDVNPNA SFDLYEKVDV 480 NHRLFVSRVA AAKTFFHRIE PSKKVSFHSN PAATAVSKAT EKFHFPVTTK VSGRVSIFSK 540 FKALIRDKFL MMRPSHSYQR LGSKETTVNE LLQIVSLLLA PKQINGCPTE QELVKKKAKE 600 VMKPGWGREG SNKLWLPLSK GKGISSMFLS GKWTFLTSAL AISTPAECDH * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-55 | 1 | 162 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-55 | 1 | 162 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-55 | 1 | 162 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-55 | 1 | 162 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
4dul_A | 1e-55 | 1 | 162 | 12 | 171 | NAC domain-containing protein 19 |
4dul_B | 1e-55 | 1 | 162 | 12 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.83155 | 0.0 | panicle |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | Q8H045 |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00212 | DAP | Transfer from AT1G65910 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os03g02800.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os03g02800 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB265821 | 0.0 | AB265821.1 Oryza sativa Japonica Group RIM1 mRNA for NAC protein, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015628513.1 | 0.0 | NAC domain-containing protein 45 isoform X1 | ||||
Refseq | XP_015628514.1 | 0.0 | NAC domain-containing protein 45 isoform X1 | ||||
Refseq | XP_015628515.1 | 0.0 | NAC domain-containing protein 45 isoform X1 | ||||
Refseq | XP_015628518.1 | 0.0 | NAC domain-containing protein 45 isoform X1 | ||||
Refseq | XP_015628520.1 | 0.0 | NAC domain-containing protein 45 isoform X1 | ||||
Refseq | XP_025879975.1 | 0.0 | NAC domain-containing protein 45 isoform X1 | ||||
Refseq | XP_025879976.1 | 0.0 | NAC domain-containing protein 45 isoform X1 | ||||
Refseq | XP_025879977.1 | 0.0 | NAC domain-containing protein 45 isoform X1 | ||||
Refseq | XP_025879978.1 | 0.0 | NAC domain-containing protein 45 isoform X1 | ||||
Refseq | XP_025879979.1 | 0.0 | NAC domain-containing protein 45 isoform X1 | ||||
TrEMBL | A0A0E0NNW9 | 0.0 | A0A0E0NNW9_ORYRU; Uncharacterized protein | ||||
TrEMBL | Q8H045 | 0.0 | Q8H045_ORYSJ; NAC protein | ||||
STRING | ORUFI03G01320.1 | 0.0 | (Oryza rufipogon) | ||||
STRING | OS03T0119966-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6624 | 36 | 51 | Representative plant | OGRP8717 | 10 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G65910.1 | 1e-128 | NAC domain containing protein 28 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os03g02800.1 |
Entrez Gene | 9270943 |
Publications ? help Back to Top | |||
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