PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g02160.3
Common NameEhd4
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C3H
Protein Properties Length: 833aa    MW: 89491.2 Da    PI: 4.4136
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g02160.3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.77.2e-07812832526
                       --SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                       +C+ f+++G+C+ G++C++ H+
  LOC_Os03g02160.3 812 ICK-FHENGYCRKGASCNYLHP 832
                       799.9999*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.126807832IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.3E-5809831IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-4812832IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 833 aa     Download sequence    Send to blast
MPQTSSSAHS NVESHHDHYP SWSQVQHDPK NSLQAGSGKD LNSRYDIAQK LPSQRITRDV  60
PSPVFAWSPS ESRTASSQHE GSCLSSTTNL CTHDELHSSI ASAKAKSFAP ATPVEDRGSS  120
SPSGMLSLSE RAPICSPQSA PSASASDTCK MEENMNQQKT LEADISNTSV NQSPQSKILP  180
ESSPDNQDAE HEYRSPPPIS ESKELSPQSR TTPGSSPDNQ DTEREYPSPP PISGSKEISP  240
QSRTILESSP DNQDNGHEYP SPPPIPESIE LSPHSKALPE SSPDNQDIEP ECPSPPQIPE  300
SKELSRQSKI LPESSPGNQD IEPECPSPPQ IPESKELSQQ SKILPESSPD NHDIKCEYSS  360
PTPIPESKEL SLQSKILPES SSDNQDIKCE DPSPTPISKS KEVSPQSKIL SESYLDNQDV  420
ERECPSSILI TESKELAVDL PGSISLAPEK TASTDVGENS SLAFIFPKST LAGDDALKSV  480
FDMAKAHLEC EDSKVKEELY VESTVVIRDD MVVNPASGVE SIDMSENLLE SLMEQSCGTF  540
YMDGTTALEG FLSGSTKEEP QCSSPIALST CSSPIALSPW GEHGYYQGDS VGSSLWGVQD  600
DDPIGNIWPL SSQAPALQYS SAGSTAHFID EATVTHGNNG VVLSSTPGEE VGLPNSGVCT  660
DWGLVEQVNP ETNDASVSMI DKNSGLVDSQ PSANDGSDVG TARNTNHNTN LSLNHETAVP  720
LSRSSGEASR KHGFITDLNV ATSEEALGNT KNWNPYAGNA NRGSQRNHHR DRYSQISESW  780
LLSSNYSRSR SDGFGTGGSS RSTPRGQTQR GICKFHENGY CRKGASCNYL HP*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.95530.0callus| leaf| panicle| seed
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO379887580.0
Expression AtlasJ9R5R9-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g02160.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g02160
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ8288630.0JQ828863.1 Oryza sativa Japonica Group cultivar Kita-ake CCCH-type zinc finger protein (Ehd4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630499.10.0zinc finger CCCH domain-containing protein 20 isoform X1
SwissprotQ0DVU40.0C3H20_ORYSJ; Zinc finger CCCH domain-containing protein 20
TrEMBLJ9R5R90.0J9R5R9_ORYSJ; CCCH-type zinc finger protein
STRINGORGLA03G0007700.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27091822
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Gao H, et al.
    Ehd4 encodes a novel and Oryza-genus-specific regulator of photoperiodic flowering in rice.
    PLoS Genet., 2013. 9(2): p. e1003281
    [PMID:23437005]