PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g02160.1
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C3H
Protein Properties Length: 832aa    MW: 89420.2 Da    PI: 4.4136
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g02160.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.77.2e-07811831526
                       --SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                       +C+ f+++G+C+ G++C++ H+
  LOC_Os03g02160.1 811 ICK-FHENGYCRKGASCNYLHP 831
                       799.9999*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.126806831IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.3E-5808830IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-4811831IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 832 aa     Download sequence    Send to blast
MPQTSSSAHS NVESHHDHYP SWSQVQHDPK NSLQAGSGKD LNSRYDIAQK LPSQRITRDV  60
PSPVFAWSPS ESRTASSQHE GSCLSSTTNL CTHDELHSSI ASAKAKSFAP ATPVEDRGSS  120
SPSGMLSLSE RAPICSPQSA PSASASDTCK MEENMNQQKT LEADISNTSV NQSPQSKILP  180
ESSPDNQDAE HEYRSPPPIS ESKELSPQSR TTPGSSPDNQ DTEREYPSPP PISGSKEISP  240
QSRTILESSP DNQDNGHEYP SPPPIPESIE LSPHSKALPE SSPDNQDIEP ECPSPPQIPE  300
SKELSRQSKI LPESSPGNQD IEPECPSPPQ IPESKELSQQ SKILPESSPD NHDIKCEYSS  360
PTPIPESKEL SLQSKILPES SSDNQDIKCE DPSPTPISKS KEVSPQSKIL SESYLDNQDV  420
ERECPSSILI TESKELAVDL PGSISLAPEK TASTDVGENS SLAFIFPKST LAGDDALKSV  480
FDMAKAHLEC EDSKVKEELY VESTVVIRDD MVVNPASGVE SIDMSENLLE SLMEQSCGTF  540
YMDGTTALEG FLSGSTKEEP QCSSPIALST CSSPIALSPW GEHGYYQGDS VGSSLWGVQD  600
DDPIGNIWPL SSQAPALQYS SGSTAHFIDE ATVTHGNNGV VLSSTPGEEV GLPNSGVCTD  660
WGLVEQVNPE TNDASVSMID KNSGLVDSQP SANDGSDVGT ARNTNHNTNL SLNHETAVPL  720
SRSSGEASRK HGFITDLNVA TSEEALGNTK NWNPYAGNAN RGSQRNHHRD RYSQISESWL  780
LSSNYSRSRS DGFGTGGSSR STPRGQTQRG ICKFHENGYC RKGASCNYLH P*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.95530.0callus| leaf| panicle| seed
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO379887580.0
Expression AtlasQ10SS3-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g02160.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g02160
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ8288630.0JQ828863.1 Oryza sativa Japonica Group cultivar Kita-ake CCCH-type zinc finger protein (Ehd4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630500.10.0zinc finger CCCH domain-containing protein 20 isoform X2
SwissprotQ0DVU40.0C3H20_ORYSJ; Zinc finger CCCH domain-containing protein 20
TrEMBLQ10SS30.0Q10SS3_ORYSJ; Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
STRINGORUFI03G00760.20.0(Oryza rufipogon)
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]