PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os03g01890.1 | ||||||||
Common Name | HB1, HOX10, LOC4331345, Os03g0109400, OsJ_008792, OSJNBb0043C10.12 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 840aa MW: 91828.6 Da PI: 5.9796 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.4 | 2.4e-18 | 27 | 85 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le++++ +++p+ ++r++L +++ +++ +q+kvWFqNrR ++k+ LOC_Os03g01890.1 27 KYVRYTPEQVEALERVYADCPKPTSSRRQQLLRECpilaNIEPKQIKVWFQNRRCRDKQ 85 5678****************************************************996 PP | |||||||
2 | START | 167 | 1.3e-52 | 165 | 372 | 2 | 204 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEE CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galq 92 +aee+++e+++ka+ ++ Wv+++ +++g++++ +++ s++++g a+ra+g+v +++++ve+l d++ W ++++ e+ i g g+++ LOC_Os03g01890.1 165 IAEETLTEFLSKATGTAIDWVQMPGMKPGPDSVGIVAISHGCRGVAARACGLVNLEPTKVVEILKDRP-SWFRDCRNLEVFTMIPAGngGTVE 256 789*******************************************************9999988888.****************9999**** PP EEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHH CS START 93 lmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwll 181 l +++l+a+++lvp Rdf+++Ry+ ++++g++v++++S++ p+ +++vRae+lpSg+l++p+++g+s v++v+h dl++++++++l LOC_Os03g01890.1 257 LVYTQLYAPTTLVPaRDFWTLRYTTTMEDGSLVVCERSLSGSGGGPSaasAQQYVRAEMLPSGYLVRPCEGGGSIVHIVDHLDLEAWSVPEVL 349 ****************************************9999999898999**************************************** PP HHHHHHHHHHHHHHHHHHTXXXX CS START 182 rslvksglaegaktwvatlqrqc 204 r+l++s+++ ++k+++a+l++ + LOC_Os03g01890.1 350 RPLYESSRVVAQKMTTAALRHIR 372 *******************9865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-18 | 9 | 85 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 15.467 | 22 | 86 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.1E-16 | 24 | 90 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 6.84E-16 | 26 | 88 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.17E-16 | 27 | 87 | No hit | No description |
Pfam | PF00046 | 8.4E-16 | 28 | 85 | IPR001356 | Homeobox domain |
CDD | cd14686 | 3.80E-6 | 79 | 118 | No hit | No description |
PROSITE profile | PS50848 | 28.181 | 155 | 383 | IPR002913 | START domain |
CDD | cd08875 | 2.46E-72 | 159 | 375 | No hit | No description |
SuperFamily | SSF55961 | 1.92E-37 | 164 | 376 | No hit | No description |
Gene3D | G3DSA:3.30.530.20 | 4.7E-22 | 164 | 350 | IPR023393 | START-like domain |
SMART | SM00234 | 5.9E-41 | 164 | 374 | IPR002913 | START domain |
Pfam | PF01852 | 3.8E-50 | 165 | 372 | IPR002913 | START domain |
Pfam | PF08670 | 2.0E-48 | 696 | 838 | IPR013978 | MEKHLA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009049 | anatomy | inflorescence | ||||
PO:0001083 | developmental stage | inflorescence development stage | ||||
PO:0007006 | developmental stage | IL.00 inflorescence just visible stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 840 aa Download sequence Send to blast |
MAAAVAMRGS SSDGGGYDKV SGMDSGKYVR YTPEQVEALE RVYADCPKPT SSRRQQLLRE 60 CPILANIEPK QIKVWFQNRR CRDKQRKESS RLQAVNRKLT AMNKLLMEEN ERLQKQVSQL 120 VHENAHMRQQ LQNTPLANDT SCESNVTTPQ NPLRDASNPS GLLSIAEETL TEFLSKATGT 180 AIDWVQMPGM KPGPDSVGIV AISHGCRGVA ARACGLVNLE PTKVVEILKD RPSWFRDCRN 240 LEVFTMIPAG NGGTVELVYT QLYAPTTLVP ARDFWTLRYT TTMEDGSLVV CERSLSGSGG 300 GPSAASAQQY VRAEMLPSGY LVRPCEGGGS IVHIVDHLDL EAWSVPEVLR PLYESSRVVA 360 QKMTTAALRH IRQIAQETSG EVVYALGRQP AVLRTFSQRL SRGFNDAISG FNDDGWSIMG 420 GDGVEDVVIA CNSTKKIRSN SNAGIAFGAP GGIICAKASM LLQSVPPAVL VRFLREHRSE 480 WADYNIDAYL ASTLKTSACS LTGLRPMRFS GSQIIIPLAH TVENEEILEV VRLEGQPLTH 540 DEALLSRDIH LLQLCTGIDE KSVGSSFQLV FAPIDDFPDE TPLISSGFRV IPLDMKTDGA 600 SSGRTLDLAS SLEVGSATAQ ASGDASADDC NLRSVLTIAF QFPYELHLQD SVAAMARQYV 660 RSIVSAVQRV SMAISPSQTG LNAGQRIISG FPEAATLARW VCQSYHYHLG VELLSQSDGD 720 AEQLLKMLWH YQDAILCCSF KEKPVFTFAN KAGLDMLETS LVALQDLTLD RIFDEPGKEA 780 LFSNIPKLME QGHVYLPSGV CMSGMGRHVS FDQAVAWKVL AEDSNVHCLA FCFVNWSFV* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.22665 | 0.0 | callus| flower| leaf| panicle| root| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32987587 | 0.0 | ||||
Expression Atlas | Q6TAQ6 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os03g01890.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by miR166 in the shoot apicam meristem (SAM) region of devoloping embryo. {ECO:0000269|PubMed:17804793}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os03g01890 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK102378 | 0.0 | AK102378.1 Oryza sativa Japonica Group cDNA clone:J033091P14, full insert sequence. | |||
GenBank | AY425991 | 0.0 | AY425991.1 Oryza sativa (japonica cultivar-group) homeodomain leucine-zipper protein Hox10 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015632709.1 | 0.0 | homeobox-leucine zipper protein HOX10 | ||||
Swissprot | Q6TAQ6 | 0.0 | HOX10_ORYSJ; Homeobox-leucine zipper protein HOX10 | ||||
TrEMBL | A0A0E0J4U5 | 0.0 | A0A0E0J4U5_ORYNI; Uncharacterized protein | ||||
STRING | OS03T0109400-02 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP374 | 38 | 197 | Representative plant | OGRP651 | 16 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60690.1 | 0.0 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os03g01890.1 |
Entrez Gene | 4331345 |
Publications ? help Back to Top | |||
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