PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g01870.1
Common NameLOC4331342, Os03g0109000, OsJ_09117, OSNPB_030109000
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 298aa    MW: 34032 Da    PI: 6.0358
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g01870.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM159.61.2e-49231501128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                       lppGfrFhP+deelv +yL++k ++++  + +++++ evd++ +ePwdLp+ +k +++ewyfFs r++kyatg r+nra k+gyWkatgkdk+
  LOC_Os03g01870.1  23 LPPGFRFHPSDEELVGYYLRNKQQQQQqqTAATSMLVEVDLHACEPWDLPEVAKVGSDEWYFFSWRERKYATGWRRNRASKQGYWKATGKDKP 115
                       79********************99998433334569**************88888999*********************************** PP

               NAM  92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       +l+   ++ g +ktLvfy+grap+g+kt Wvmhe+rl
  LOC_Os03g01870.1 116 ILH--PTVAGARKTLVFYSGRAPNGRKTAWVMHEFRL 150
                       **9..7789**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.85E-5711180IPR003441NAC domain
PROSITE profilePS5100556.1123180IPR003441NAC domain
PfamPF023652.1E-2624150IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020104anatomyleaf sheath
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MDGLISDDSM MMGGEVRAIE SRLPPGFRFH PSDEELVGYY LRNKQQQQQQ QTAATSMLVE  60
VDLHACEPWD LPEVAKVGSD EWYFFSWRER KYATGWRRNR ASKQGYWKAT GKDKPILHPT  120
VAGARKTLVF YSGRAPNGRK TAWVMHEFRL LHHHHHPNPN IQNMQQQEGD DWVLCRVFRK  180
GNNSNGQPLA TSSPPAHHLV ESLISSPAPT IMSDHDRLFT IQLPHHQHCD EQYFFLDDDE  240
QHQQQLLDLS VLQAPTSFES EQAPGHGGME INIAEMESFD TTCAALQDAS DYCMQLY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-462018212170Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.347120.0flower
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329804400.0
Expression AtlasQ10SW5-
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in the root tip and in lateral root initiation sites. Also detected in expanding cotyledon, and in leaf primordia. {ECO:0000269|PubMed:11114891}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g01870.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g01870
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0704160.0AK070416.1 Oryza sativa Japonica Group cDNA clone:J023051N16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629924.10.0NAC transcription factor 32
SwissprotQ84TE69e-60NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLA0A0E0NNK70.0A0A0E0NNK7_ORYRU; Uncharacterized protein
TrEMBLQ10SW50.0Q10SW5_ORYSJ; NAC-domain containing protein 21/22, putative, expressed
STRINGORUFI03G00490.10.0(Oryza rufipogon)
STRINGOS03T0109000-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP169171212
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.12e-60NAC domain containing protein 74
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]