PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g56600.1
Common NameLOC4331098, OJ1116_E04.11, Os02g0810900, OsJ_08821, OSNPB_020810900, P0016F11.3
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 332aa    MW: 36318.7 Da    PI: 7.4375
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g56600.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1592e-49101541128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.......lelee.....vikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksg 81 
                       lppGfrF P+deelv++yL++kv +++                 ++ evd++++ePw+Lp  +k +++ewyfFs rd+kyatg r+nratksg
  LOC_Os02g56600.1  10 LPPGFRFYPSDEELVCHYLHNKVVNQHrfagvggA---AaagggTMVEVDLHTHEPWELPDVAKLSTNEWYFFSFRDRKYATGLRTNRATKSG 99 
                       79********************9999966665551...0445547***************87788999************************* PP

               NAM  82 yWkatgkdkevlsk........kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       yWkatgkd+ +++         + + vg++ktLvfy+grap+g+kt+Wvmhe+r+
  LOC_Os02g56600.1 100 YWKATGKDRVIHNPklhaaahrRASIVGMRKTLVFYRGRAPNGVKTNWVMHEFRM 154
                       ************98777776655556***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-587173IPR003441NAC domain
PROSITE profilePS5100555.62410173IPR003441NAC domain
PfamPF023651.2E-2711154IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009038anatomypalea
PO:0001048developmental stagepalea development stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MGLRDIELTL PPGFRFYPSD EELVCHYLHN KVVNQHRFAG VGGAAAAGGG TMVEVDLHTH  60
EPWELPDVAK LSTNEWYFFS FRDRKYATGL RTNRATKSGY WKATGKDRVI HNPKLHAAAH  120
RRASIVGMRK TLVFYRGRAP NGVKTNWVMH EFRMENPHTP PKEDWVLCRV FYKKKAETET  180
ESSYSMENEQ EAVIAMARSA AAIKAGGCYS NSSSSHDPAA AGHHSPPPFP ASLAACSSSH  240
HYSSHPPPPP DHHHHHHMPV TGGGGGSLNE FIPTTSMALY SSIFDFSQHL DGGAVAASAS  300
AAGSRVDGGE QCGLMELGLE EHYNYNGLMP M*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-4611794170NO APICAL MERISTEM PROTEIN
1ut4_B1e-4611794170NO APICAL MERISTEM PROTEIN
1ut7_A1e-4611794170NO APICAL MERISTEM PROTEIN
1ut7_B1e-4611794170NO APICAL MERISTEM PROTEIN
3swm_A2e-4611797173NAC domain-containing protein 19
3swm_B2e-4611797173NAC domain-containing protein 19
3swm_C2e-4611797173NAC domain-containing protein 19
3swm_D2e-4611797173NAC domain-containing protein 19
3swp_A2e-4611797173NAC domain-containing protein 19
3swp_B2e-4611797173NAC domain-containing protein 19
3swp_C2e-4611797173NAC domain-containing protein 19
3swp_D2e-4611797173NAC domain-containing protein 19
4dul_A1e-4611794170NAC domain-containing protein 19
4dul_B1e-4611794170NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.511200.0flower| panicle| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329810050.0
Expression AtlasQ6K5X2-
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in the root tip and in lateral root initiation sites. Also detected in expanding cotyledon, and in leaf primordia. {ECO:0000269|PubMed:11114891}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g56600.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g56600
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0609760.0AK060976.1 Oryza sativa Japonica Group cDNA clone:006-202-E09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623778.10.0protein CUP-SHAPED COTYLEDON 1
SwissprotQ84TE66e-60NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLA0A0E0NML90.0A0A0E0NML9_ORYRU; Uncharacterized protein
TrEMBLB8AEI00.0B8AEI0_ORYSI; Uncharacterized protein
TrEMBLQ6K5X20.0Q6K5X2_ORYSJ; Os02g0810900 protein
STRINGORUFI02G38340.10.0(Oryza rufipogon)
STRINGOS02T0810900-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69738166
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.12e-77NAC domain containing protein 74
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]