PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g55380.1
Common NameLOC4331013, OJ1004_E04.29, Os02g0797100, OsJ_08726, OSNPB_020797100
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 173aa    MW: 18704.8 Da    PI: 6.9454
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g55380.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.39.3e-19756255
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                      +y+GVr+++ +g+Wv+eIr+p        +r++lg+f tae+Aa+a+++a++ + g
  LOC_Os02g55380.1  7 RYRGVRQRH-WGSWVSEIRHP-----LlkTRIWLGTFETAEDAARAYDEAARIMCG 56
                      69******9.**********8.....334**********************98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.91E-31664No hitNo description
Gene3DG3DSA:3.30.730.102.4E-34765IPR001471AP2/ERF domain
SuperFamilySSF541715.36E-21765IPR016177DNA-binding domain
SMARTSM003804.0E-38770IPR001471AP2/ERF domain
PROSITE profilePS5103221.061764IPR001471AP2/ERF domain
PfamPF008472.6E-11755IPR001471AP2/ERF domain
PRINTSPR003672.7E-11819IPR001471AP2/ERF domain
PRINTSPR003672.7E-113046IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009089anatomyendosperm
PO:0007042developmental stagewhole plant fruit formation stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MARPQQRYRG VRQRHWGSWV SEIRHPLLKT RIWLGTFETA EDAARAYDEA ARIMCGPRAR  60
TNFPLADATA AAAAAAASSS FLSAALVAKL HRFNLASVQA TQRQREAAAT AAAASSASAT  120
TPPLGNAAAA DDDARTTTTY GAEWSGRFLE EQHVEQMIDE LLDSNFSMEI CY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-17665464ATERF1
3gcc_A2e-17665464ATERF1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1154492260.0
Expression AtlasQ6KAJ7-
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00526DAPTransfer from AT5G25190Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g55380.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g55380
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0039750.0AP003975.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1004_E04.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622684.11e-122ethylene-responsive transcription factor ERF003
SwissprotQ94AW53e-55ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLA0A0E0GE281e-121A0A0E0GE28_ORYNI; Uncharacterized protein
TrEMBLA2XAK61e-121A2XAK6_ORYSI; Uncharacterized protein
TrEMBLI1P5661e-121I1P566_ORYGL; Uncharacterized protein
TrEMBLQ6KAJ71e-121Q6KAJ7_ORYSJ; Os02g0797100 protein
STRINGOS02T0797100-001e-122(Oryza sativa)
STRINGONIVA02G37990.11e-122(Oryza nivara)
STRINGORGLA02G0312200.11e-122(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141835118
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.18e-32ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]