PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os02g55320.1 | ||||||||
Common Name | LOC4331008, OJ1004_E04.14, OJ1695_H09.29, ORR3, Os02g0796500, OsJ_08721, RR23 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | ARR-B | ||||||||
Protein Properties | Length: 689aa MW: 74384 Da PI: 6.9181 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 90.1 | 2e-28 | 214 | 267 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++W+ eLH++Fv av+qL G++kA+Pk+ilelm+v+ Lt+e+v+SHLQkYRl LOC_Os02g55320.1 214 KPRVVWSVELHRKFVAAVNQL-GIDKAVPKRILELMNVEKLTRENVASHLQKYRL 267 79*******************.********************************8 PP | |||||||
2 | Response_reg | 76.5 | 9.8e-26 | 26 | 134 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHH CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealk 91 vl vdD+p+ +++l+++l + +y +v+++ ++ al++l+e++ +Dl++ D+ mp+mdG++ll+ e++lp+i+++ +ge +++l+ + LOC_Os02g55320.1 26 VLAVDDDPVCLKVLETLLLRCQY-HVTTTNQAAIALKMLRENRdmFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSVNGETKTVLKGIT 116 799********************.***************99999********************87754.558******************** PP TTESEEEESS--HHHHHH CS Response_reg 92 aGakdflsKpfdpeelvk 109 Ga d+l Kp+ +eel++ LOC_Os02g55320.1 117 HGACDYLLKPVRIEELRN 134 ****************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF036392 | 1.1E-209 | 1 | 688 | IPR017053 | Response regulator B-type, plant |
SuperFamily | SSF52172 | 2.85E-34 | 23 | 150 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 1.5E-40 | 23 | 157 | No hit | No description |
SMART | SM00448 | 3.6E-30 | 24 | 136 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 42.416 | 25 | 140 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 7.6E-23 | 26 | 135 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 1.63E-26 | 27 | 140 | No hit | No description |
PROSITE profile | PS51294 | 12.56 | 211 | 270 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.7E-30 | 212 | 272 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 9.14E-20 | 212 | 271 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.1E-25 | 214 | 267 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.3E-6 | 216 | 266 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009736 | Biological Process | cytokinin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0020104 | anatomy | leaf sheath |
Sequence ? help Back to Top |
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Protein Sequence Length: 689 aa Download sequence Send to blast |
MRAAEERKGV VPAARRRDQF PVGMRVLAVD DDPVCLKVLE TLLLRCQYHV TTTNQAAIAL 60 KMLRENRDMF DLVISDVHMP DMDGFKLLEL VGLEMDLPVI MLSVNGETKT VLKGITHGAC 120 DYLLKPVRIE ELRNIWQHVI RRKFSTRDRA NLDFYEECNK PPNADSDHVH GHVTCGSPDQ 180 SGRPSKKRKE YCSEEEDEGE VNTQDIDDPS APKKPRVVWS VELHRKFVAA VNQLGIDKAV 240 PKRILELMNV EKLTRENVAS HLQKYRLYLK RLSAVASQQV SIVAALGGRD PFLHMGGFEG 300 LQGYQAFTSS AALSSFTPHG LLNSPRNNPA ALGTQGVPAS KSIQTMSGSH TLSHSINDAN 360 KYHLSLPGNQ KGNLGQGLAT SLGQTQMQQK WIHEETDDLS TILSGNGLSN GMSGTLQSVT 420 SSPLLPQELA ECTQAKIVSQ PSIRTSSVSS EHIEGAVGVS SGLLESRVSQ QSTIPLSGFS 480 ANGLLIHGSF NNTCANKLGG TSSSCAPARS SNDLMVARDT KGGASSFGGA MLLPPDTEQK 540 YLNFGGGNGL KQKFDDRTAD SLFDLKFVWS SVPSSQLASN IGAHHAMSQR WNNSSSNSSN 600 IGARMIGQAT SSGSTVIPQM KTDFLVSGDM AMPKNASDLS IPKLQSELSS SSCSFDGLLN 660 SIVKVEKDDV TFSDDLGCGD FYSLGACI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 7e-25 | 210 | 273 | 1 | 64 | ARR10-B |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.5243 | 0.0 | callus| flower| leaf| panicle| root| seed| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32975294 | 0.0 | ||||
Expression Atlas | Q6K8X6 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os02g55320.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Disruption Phenotype ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | DISRUPTION PHENOTYPE: Dwarf, narrow leaf, low tillering, lesion mimic, late heading and low fertility phenotypes. {ECO:0000269|PubMed:16891544}. |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os02g55320 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK099581 | 0.0 | AK099581.1 Oryza sativa Japonica Group cDNA clone:J013040N16, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015625496.1 | 0.0 | two-component response regulator ORR23 | ||||
Swissprot | Q6K8X6 | 0.0 | ORR23_ORYSJ; Two-component response regulator ORR23 | ||||
TrEMBL | I1P561 | 0.0 | I1P561_ORYGL; Two-component response regulator | ||||
STRING | OS02T0796500-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1856 | 38 | 94 | Representative plant | OGRP292 | 17 | 120 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G25180.1 | 1e-105 | response regulator 12 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os02g55320.1 |
Entrez Gene | 4331008 |
Publications ? help Back to Top | |||
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