PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g55250.1
Common NameOJ1004_E04.3, OJ1695_H09.18
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 464aa    MW: 46750.9 Da    PI: 5.9989
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g55250.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.31.4e-082522901255
                       HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       RR+ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  LOC_Os02g55250.1 252 RRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 290
                       9*****************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.1E-12223299IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.792240289IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-7251295IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-12252300IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.18E-9252294No hitNo description
PfamPF000106.5E-6252290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
MQPNARQMRG GGGGGGGGQD DFFDQMLSTL PAVWSELGSG KPAWDLTAGA VGGGGGASDD  60
HSAAAFDDSA LLASRLRQHQ IDGGGDKPIM LQLSDLHRHH GLAAGDDSGG AAGFLPLSLF  120
ADRSQDDIDA AFKSPNGARG DHALYNGFGA AGMHGAAAMQ PPPFGQGGSM PAQSFGGGAA  180
ASGGGGGGSA SAAAAAGASS GGGAAAPPRQ RQRARRGQAT DPHSIAERVY HSPTTFPFSP  240
PFFIASMPCC LRRERIAERM KALQELVPNA NKTDKASMLD EIIDYVKFLQ LQVKVLSMSR  300
LGGASAVAPL VANMSSESNG NGNATSSSGN GEAANGSSNG DNNGGGTLRV TEQQVAKLME  360
EDMGSAMQYL QGKGLCLMPI SLATAISSAT SSSLLPRTGG GAGGSLHEGG NGTSPPLVNG  420
TATGCDDAGV FFSVKFVVEL SFLLLNEDCR GKEESKLLVQ KGP*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.849006e-95leaf
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ6K8Y4
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g55250.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g55250
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0039750.0AP003975.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1004_E04.
GenBankAP0040940.0AP004094.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1695_H09.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627343.10.0transcription factor bHLH66
SwissprotQ9ZUG94e-72BH066_ARATH; Transcription factor bHLH66
TrEMBLQ6K8Y40.0Q6K8Y4_ORYSJ; Basic helix-loop-helix (BHLH)-like
STRINGOGLUM02G37030.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141937118
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58010.15e-47LJRHL1-like 3
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zhang J, et al.
    Sperm cells are passive cargo of the pollen tube in plant fertilization.
    Nat Plants, 2017. 3: p. 17079
    [PMID:28585562]