PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os02g54050.1 | ||||||||
Common Name | LOC107278604, Os02g0781300, OSNPB_020781300 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | ERF | ||||||||
Protein Properties | Length: 212aa MW: 22783.5 Da PI: 6.6764 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.5 | 1.5e-17 | 17 | 68 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 ++ykGVr++k +g+Wv+eIr p++ r r++lg+++++e+Aa+a +aa l+g+ LOC_Os02g54050.1 17 KKYKGVRRRK-WGKWVSEIRLPNS---RDRIWLGSYDSPEKAARAFDAAFVTLRGH 68 59*****998.**********933...5********************98888876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 7.47E-24 | 17 | 80 | No hit | No description |
SMART | SM00380 | 1.1E-28 | 18 | 84 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.83E-18 | 18 | 80 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.0E-26 | 18 | 80 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.2E-10 | 18 | 66 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.799 | 18 | 78 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.6E-9 | 19 | 30 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.6E-9 | 41 | 57 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001944 | Biological Process | vasculature development | ||||
GO:0002213 | Biological Process | defense response to insect | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
MMSSSSPVVA SPPEMEKKYK GVRRRKWGKW VSEIRLPNSR DRIWLGSYDS PEKAARAFDA 60 AFVTLRGHGA AGADLNFPDS PPSCDARSSD PRQVQAAALS HANRAHVTPQ QAAAALMSPP 120 SLSPPPGFAT GSEVVAPAVR ADGSIDWRPV MAHPPPLYSP PGWGGGHAYD FLQPPPPSPP 180 LPSCDDDMVD VVDESSASLW SFDTRDSYFR Y* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 19 | 25 | KGVRRRK |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | A0A0P0VQ94 |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00151 | DAP | Transfer from AT1G19210 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os02g54050.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os02g54050 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004257 | 0.0 | AP004257.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1369_G08. | |||
GenBank | AP014958 | 0.0 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015624935.1 | 1e-150 | ethylene-responsive transcription factor ERF018 | ||||
TrEMBL | A0A0P0VQ94 | 1e-149 | A0A0P0VQ94_ORYSJ; Os02g0781300 protein | ||||
STRING | OS02T0781300-00 | 1e-150 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP861 | 32 | 144 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19210.1 | 2e-32 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os02g54050.1 |
Entrez Gene | 107278604 |